HsaINT0056567 @ hg19
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140329656-140330728:-
Coord C1 exon
chr9:140330465-140330728
Coord A exon
chr9:140329791-140330464
Coord C2 exon
chr9:140329656-140329790
Length
674 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
CTTGGTCTCCTGGGCCCCAGGTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
AGCCGCCCGGCTGCCCTGCTCCGTCACCCGTGCTACCTCAGCGGCTACCAGACCACACTGGCCCTGGGCCCGCTGTATGAGTCACCCTGTGTCCACGCCACGCCCCCGCTGAGCCTCCCCCAGAACCTCACAGTTGAAGGGACAGGCAACCCTGGAGCCTGCGTCTCAGCCATCCGGGAACTTTTCAACTTCTCCAGCTGCCAGGGCCAGGAGGACTGCGCCTTTGACGGGGTCTACCAGCCCCCGCTGCGGGGCCAGTTCTAT
Seq A exon
GTGAGCACCTACACTGCCCCCACCAGGGGTCCGGGCTTCCTTGTGAGGCCTCAGGTGCCTGTCTGACTCCAGCAGGCCCAGGAGGGGCCCAGGCTGGCTCTTAGGGGCTCTGGGAGCCCGGGTGGGGTGGATCTGGCCCAGCGTGGCCACAGCGAAGGCACAGCCACCTCCCCTCTCACTCAGGCCTTCTCCAACTTCTACTACACCTTCCACTTCCTGAACCTCACCTCCAGGCAGCCCCTGAGCACGGTCAACGCCACCATCTGGGAGTTTTGCCAGAGGCCCTGGAAACTGGTGGGTGGGCCCTGGGCTCCCTGGCTGCAGCGAGGGTCCCTGAGGGTACAGGGCTGCCTCGGGCAGGATGCTGGAGCCTCATTCTGGGCAGCACGGCCAGCAGGGCCGGGGGAGGCAAGGGCAGAGGACAGCTCCAGGCCGTGCCACTCCAGGTAGGAGGCTGTGGCCACGGCCGCAGCTGGGCCCAGCCTCTGGCCCGCCAAGAAGGGGCCGCAACCCGCACCACGTAACTGGTCGGTGGGGCCAGGGAGGGGCTCTCTACCACTGCCCGGCACCCTCTTGTTGTCTGCGTGCTCAGGTTGGCCAGGACAGATGGGGCGGTCCCCGCATGACTGGGGATCAGGGGCCCTCACCTCGCCTCTTGGTCTCCTGGGCCCCAG
Seq C2 exon
GTGGAGGCCAGCTACCCTGGGCAGGACCGCTGGCTGCGGGACTACTGTGCCTCAGGCCTGTACATCCTCACCCTCCTGCACGAGGGCTACGGGTTCAGCGAGGAGACCTGGCCCAGCCTCGAGTTCCGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-ENTPD8:NM_198585:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(26.9=100),PF0115012=GDA1_CD39=PU(2.6=2.3)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(1.5=11.1),PF0115012=GDA1_CD39=FE(56.4=100)
Main Inclusion Isoform:
NA

Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCAGCGGCTACCAGAC
R:
CAGGTCTCCTCGCTGAACCC
Band lengths:
342-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)