Special

HsaINT0056567 @ hg19

Intron Retention

Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140329656-140330728:-
Coord C1 exon
chr9:140330465-140330728
Coord A exon
chr9:140329791-140330464
Coord C2 exon
chr9:140329656-140329790
Length
674 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
CTTGGTCTCCTGGGCCCCAGGTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
AGCCGCCCGGCTGCCCTGCTCCGTCACCCGTGCTACCTCAGCGGCTACCAGACCACACTGGCCCTGGGCCCGCTGTATGAGTCACCCTGTGTCCACGCCACGCCCCCGCTGAGCCTCCCCCAGAACCTCACAGTTGAAGGGACAGGCAACCCTGGAGCCTGCGTCTCAGCCATCCGGGAACTTTTCAACTTCTCCAGCTGCCAGGGCCAGGAGGACTGCGCCTTTGACGGGGTCTACCAGCCCCCGCTGCGGGGCCAGTTCTAT
Seq A exon
GTGAGCACCTACACTGCCCCCACCAGGGGTCCGGGCTTCCTTGTGAGGCCTCAGGTGCCTGTCTGACTCCAGCAGGCCCAGGAGGGGCCCAGGCTGGCTCTTAGGGGCTCTGGGAGCCCGGGTGGGGTGGATCTGGCCCAGCGTGGCCACAGCGAAGGCACAGCCACCTCCCCTCTCACTCAGGCCTTCTCCAACTTCTACTACACCTTCCACTTCCTGAACCTCACCTCCAGGCAGCCCCTGAGCACGGTCAACGCCACCATCTGGGAGTTTTGCCAGAGGCCCTGGAAACTGGTGGGTGGGCCCTGGGCTCCCTGGCTGCAGCGAGGGTCCCTGAGGGTACAGGGCTGCCTCGGGCAGGATGCTGGAGCCTCATTCTGGGCAGCACGGCCAGCAGGGCCGGGGGAGGCAAGGGCAGAGGACAGCTCCAGGCCGTGCCACTCCAGGTAGGAGGCTGTGGCCACGGCCGCAGCTGGGCCCAGCCTCTGGCCCGCCAAGAAGGGGCCGCAACCCGCACCACGTAACTGGTCGGTGGGGCCAGGGAGGGGCTCTCTACCACTGCCCGGCACCCTCTTGTTGTCTGCGTGCTCAGGTTGGCCAGGACAGATGGGGCGGTCCCCGCATGACTGGGGATCAGGGGCCCTCACCTCGCCTCTTGGTCTCCTGGGCCCCAG
Seq C2 exon
GTGGAGGCCAGCTACCCTGGGCAGGACCGCTGGCTGCGGGACTACTGTGCCTCAGGCCTGTACATCCTCACCCTCCTGCACGAGGGCTACGGGTTCAGCGAGGAGACCTGGCCCAGCCTCGAGTTCCGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-ENTPD8:NM_198585:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0115012=GDA1_CD39=FE(26.9=100),PF0115012=GDA1_CD39=PU(2.6=2.3)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(1.5=11.1),PF0115012=GDA1_CD39=FE(56.4=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCAGCGGCTACCAGAC
R:
CAGGTCTCCTCGCTGAACCC
Band lengths:
342-1016
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]