MmuINT0057748 @ mm10
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:25084261-25084860:+
Coord C1 exon
chr2:25084261-25084371
Coord A exon
chr2:25084372-25084725
Coord C2 exon
chr2:25084726-25084860
Length
354 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ATCAGTTTCTGGAACCCAAGGTG
3' ss Score
-0.84
Exon sequences
Seq C1 exon
GCATTTTCCAACTTTTACTACACCTTCCATTTCCTGAACCTCACGTCCAGGCAATCACTGAACACTGTCAACGACACTGTCTGGAAGTTCTGTCAGAAACCCTGGAAACTG
Seq A exon
GTGGGTGACCTTGGATACCTACCCTAGCCCTGTCTCCATACCATACCTTGGGTAGGCAGGGCCTTTGGGGTCTTGTGGGGTTTTCTTGGACAGAGATTTGTGATAAAGTTCCCTTTAGGAAGCAGAAGTGGGGAGGAAAAGGCCCAGGGCACCGATGTTATCAGCCTCTGGTTGTTATGAGGTTGGCCACCTAGCTGGAGGGTGATTTCCACAGGGATTTGCAAAAGGACTTTCTGAAACACTTAACAGTCTCCCGATGTCTGGAGACTGGATGGATGGAGGTCCCACCATAGCTGGGAGAGGTGCCCCAAGGTCATGGAACCTCACTTTACTGATCAGTTTCTGGAACCCAAG
Seq C2 exon
GTGGAAGTCAGCTATCCTGGGCAGGAGCGCTGGTTACGGGACTACTGTGCCTCGGGTCTGTACATCCTCGTATTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813:ENSMUST00000044078:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(1.6=11.1),PF0115012=GDA1_CD39=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTTCCAACTTTTACTACACCT
R:
CTGCTTCTGGAACTGGATGTTG
Band lengths:
246-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types