RnoINT0055229 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2292770-2298955:+
Coord C1 exon
chr3:2292770-2292880
Coord A exon
chr3:2292881-2298820
Coord C2 exon
chr3:2298821-2298955
Length
5940 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ATCGACTTCTGGAACCCAAGGTG
3' ss Score
-0.82
Exon sequences
Seq C1 exon
GCATTTTCCAACTTTTACTACACCTTCCAGTTCCTCAACCTCACCTCCAGGCAGCCACTGAACATCGTCAATGACACTATCTGGAAGTTCTGTCAGAAACCCTGGAGACTG
Seq A exon
GTGGGTGACCCTGGGTACCTAGCCCTGCCTCCGTATCATACCATGGGCAAGCGGAGCCTCTGGGGGTTTGTGGGGTTTTCCTGGAGGACAGAGATGTGTGATAAAGTCCCCTTCAGGTAGCTGGGTTGGGGAAGAGAGCACAGTCACAGGGAACGTTGCCTGCTTCTGTGTAGAAAAAGATCCAGGGCACTGATGATATCAGCCTCTGGTTATTATGAGGTCGAACGCTCCAGCCCTCTCCTAGCTGGAGGGTGGGCTCCACAGGGATTTGCAGAAGAGCTCTCTGAAATACTGCTATCTGGAGACTGGATGGGTGGGTGGGTGGATGGATGGGTGAATGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGGTGGGTGGATGGATGGATGGATGAATGGATGGATGGATGGATGGGTGGATGGATGGGTGGATGGATGGATGGATGGGTGGATGGATGGGTGGCTGTGTGAATGGATGGGTGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGGTGGGTGGATGGATGGATGGATGGGTGGATGGATGGGTGGATGGATGGGTGGATGGATGGCTCTGTGAATGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATTGATGGGTGGATGGATGGGTGGATGGATGGATGGATGGGTGGATGGATGGATGGATGGGTGAATGGGTGGGTGGGTGGATGGATGGATAGGTGAATGGATGGGTGGATGGATGGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGGTTCCATGTGGTACCAGGGCTTGAACACAGGACTTCTTGCATGCTAGGTAAACAATTCTACCTATATTCAGCCGAGTTTTACCCAGTAACTTATGTTTTAAGAACCCAGCAGATCTGAAGGAGAGTGACTTCCCTTGGCCCACCTACATCAGCTCTGCAGCACCCTTCCGTAGCCTCAGGCAACTGTTCCCTGACCACGTCTGGCCTGGCCCAAGTGAGAAGGACAGAGGACAAGGTCCACAGTAACAGGGAGGGTGTCTCCAGTCCTGTCTTCTCTGTCATTCCCAGGTCAGTTCTAAAGTCCATCCTGAGAACTAGGGACGCCACTCTTCCTCCCTCCCCAGAAGCAAAATGTAACCCCAGGATCGGGATCCGTGAGGCAGAGTGAAATTAGTAGGTGTCTGGCCCAAGCAGCAGCTGGAGAGAAGCCCGCTCCTCCCCCCACAGCCCCAGGTTCAAGTGGGTGGAGACAGGGTGTGGAGACAGGGTGTGGAGGGCAGAAGCAGAACTTCCTCCAGCTACCCTTGAAAGCTGGTATCCAGCGCAGGTGAGGACCCCATGGGCTGTCCTGGTCTGTGGGCTGGCTCTGGTAGGGGACTGCCTGTCCTGGGGGAGGGAACTGTTTGTCCTGGGTGAGAGGAGCCTGCCTTGTCCCTTGTGCTGCGGTCCTGAGGTGGGGTCTGTGTTCTCTTGGTTCCTATCTGGGAGCCACTTGTCCCTGTGCTCTAGGGTGCTGGCTCCAGTTACTGCTCAGGCTCGGGGCAGGCGTTTGCCCACTTTCCTCAGTTCCCCTTCCTTCAGATTAGCTCTTGCCCCACTTAGCCTACTCCCGGAAGTCCTAACCCCCGTCATTCTTGAACACTGGGAGTGTCTCCACTCTTGGGGGATATGCCATGAGATTCCAAGTCACAGAATTTCAAAGTGCTTGGAGGTTCAGGGAACACCATGGCTTTGCCTAGTTCAATAGGCAACAACATCCATTGTGAGGCTTGCTCCAAAGCAGAGCTAACCAGAAGCTTGGAGGCTGGAATAGGTCAGGACATAGAACCCCCTCTGGGCTCCAAAAAAGATCAAGGTATAGACATCTTGAGCATCATGGAGAGTAGCATTCCATGGTCAGTCAGCTGCCCAGGTTCATCTGGGGTCAGCTAAAATCTATCAGATCTCCATTAGAGAAATCCAAGTTTAGAATTTCAAGAAGAAACAATCCCCCCTCTCATCCATCCACCCATCCATCCATCCATCCATCGGCATTCATCCATCTCCCTCCTATCCATTCCACCCAACCCAGTCCACCTCTCCCACCCATTCCATTCCATCCTCATCAATCCACTCCATCTTTGCACATCCATCTCCATCCATCCACTCCACCGATCCATTCACACTAGCCACTCCATCTCATTCACCCATCCATCCATCACACCCAATCCATTCATTTCATCGATCCATTCACCCATCACATCCATCGCATCCCTCATCACCACCCATCCATTACACAGCCACCCATCCATTCACCCCAATCTCTCTATCCATCCACCTCATGTCCACTTTTCCGATCTAATCCTATCACACTCCACGCCTCCACTCCATTTTCATTATGCCGATCCATATCGTATTCCACCCACTCTTCACCCATTCACCAGCTATTTATCCATATATACCATTTCCACCCATCCATCCATCCAATCCACCCACCATCCTCCCATTATCTATGCCATCTCCATCCATCCATCCATCTCATCCATCCATCCCCATCCATCCACCTCATTCCATTCTACACGCCTCTCTCCTATTCCTCCACTATATCATCCTTCCCCTCCATTTCCACCCATCCCCCATACCATTCACTTTTTACCTAAATACCCTCCCCACTCACCCATCATTCATCCTATCCATTCCGATCTCCTAACTCTCTATCCATCCTATCACCACCTGCATTTCCCATCACCATCATATCATCTTTATTCATTCCATTGTCATCCATTCATGCATCTATCTCTTCACCCCATACCATTATCCTTATCTAAGTATCCATATACTAGTCTATGCATCACCATCCATCCACCTCATCCAGTCCATCCATCAATCCACCCCCACCTCAATCCTTTCCGTCATCCTTCATCCATCTCATCCACTCCCTTTCTATCCATTCACACAGCCAACTCCATCTCTACTCCACCCATCCATCCATCCATCCCCTCTTCCATTCCTCACCCATCTTCCATCCACCCATCATTACACTACATGCTTTATCCATTCATCGGTACCTCATCCATCCATCCATTACTTTCTTTCCACCTCATCCATTCACCTGTATTCACATCTCCATTCCACTTCCACCCTCCCTCTTACCATCTCTCAATGTCACCGCATTTGCCTATCCCTTGTCCATCCATTCCCATATGTCTTCACTTTCCACCCATCCAATCTGACCATCTTACCTCCTCATTCATCTCATATTCCAATCCATGCTTATCCACCTCATTCCATTTTCAGAGCCATCCATTCACCATTCCTACATCCCATTCTCTTCCATCCACCCATCCATCACTTCACCAGCCCATTCTATCTCACTCTCATCCTAAATGCATCCTATCCATCTGCACCTCTTACCTCATCCACTTCACACAGTTTTTTTCCAACCACCTAATCACATTCCATATTAACCTCTTTTCTCTGCTCATTCGTCATTCCACGCCTTTCTGGCATCCACCCATCCATCCACTCCATCCATTCATCCTCCATCCTTCTACAGCCCATTTCATCCATTCCATCTGGCATTCCATCCATACTTCCATTTCCACCACATTTCATTCACCATATCCCATCTCACTCCCCTCACCCACACCCATTCAGTCTTCCTGAATTTGCATTGTCATGATGATGTGTCTGCTCATTATCCTGTGGAGCCCACCCTGACCCAGCTCAGGAAGAGGGCTGGAGCGTTTGAATTCCCCCCTCTCATCCATCCACCCATCCATCCATCCATCCATCGGCATTCATCCATCTCCCTCCTATCCATTCCACCCAACCCAGTCCACCTCTCCCACCCATTCCATTCCATCCTCATCAATCCACTCCATCTTTGCACATCCATCTCCATCCATCCACTCCACCGATCCATTCACACTAGCCACTCCATCTCATTCACCCATCCATCCATCACACCCAATCCATTCATTTCATCGATCCATTCACCCATCACATCCATCGCATCCCTCATCACCACCCATCCATTACACAGCCACCCATCCATTCACCCCAATCTCTCTATCCATCCACCTCATGTCCACTTTTCCGATCTAATCCTATCACACTCCACGCCTCCACTCCATTTTCATTATGCCGATCCATATCGTATTCCACCCACTCTTCACCCATTCACCAGCTATTTATCCATATATACCATTTCCACCCATCCATCCATCCAATCCACCCACCATCCTCCCATTATCTATGCCATCTCCATCCATCCATCCATCTCATCCATCCATCCCCATCCATCCACCTCATTCCATTCTACACGCCTCTCTCCTATTCCTCCACTATATCATCCTTCCCCTCCATTTCCACCCATCCCCCATACCATTCACTTTTTACCTAAATACCCTCCCCACTCACCCATCATTCATCCTATCCATTCCGATCTCCTAACTCTCTATCCATCCTATCACCACCTGCATTTCCCATCACCATCATATCATCTTTATTCATTCCATTGTCATCCATTCATGCATCTATCTCTTCACCCCATACCATTATCCTTATCTAAGTATCCATATACTAGTCTATGCATCACCATCCATCCACCTCATCCAGTCCATCCATCAATCCACCCCCACCTCAATCCTTTCCGTCATCCTTCATCCATCTCATCCACTCCCTTTCTATCCATTCACACAGCCAACTCCATCTCTACTCCACCCATCCATCCATCCATCCCCTCTTCCATTCCTCACCCATCTTCCATCCACCCATCATTACACTACATGCTTTATCCATTCATCGGTACCTCATCCATCCATCCATTACTTTCTTTCCACCTCATCCATTCACCTGTATTCACATCTCCATTCCACTTCCACCCTCCCTCTTACCATCTCTCAATGTCACCGCATTTGCCTATCCCTTGTCCATCCATTCCCATATGTCTTCACTTTCCACCCATCCAATCTGACCATCTTACCTCCTCATTCATCTCATATTCCAATCCATGCTTATCCACCTCATTCCATTTTCAGAGCCATCCATTCACCATTCCTACATCCCATTCTCTTCCATCCACCCATCCATCACTTCACCAGCCCATTCTATCTCACTCTCATCCTAAATGCATCCTATCCATCTGCACCTCTTACCTCATCCACTTCACACAGTTTTTTTCCAACCACCTAATCACATTCCATATTAACCTCTTTTCTCTGCTCATTCGTCATTCCACGCCTTTCTGGCATCCACCCATCCATCCACTCCATCCATTCATCCTCCATCCTTCTACAGCCCATTTCATCCATTCCATCTGGCATTCCATCCATACTTCCATTTCCACCACATTTCATTCACCATATCCCATCTCACTCCCCTCACCCACACCCATTCAGTCTTCCTGAATTTGCATTGTCATGATGATGTGTCTGCTCATTATCCTGTGGAGCCCACCCTGACCCAGCTCAGGAAGAGGGCTGGAGCGTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGGATGGGTGGCTGTGTGAATGGATGGGTGGGTGGATGGATGGATGGATGGATGGATGGATGGGTGAATGGATGGATGGATGGATGGATGGGTGGATGGATGGATGGATGGATGGGTGGATGGATGGATGGGTGAATGGATGGGTGGCTGTGTCAATGGATGGGTGGGTGGATGGATGGATGGATGGGTGGGTGGGTGAATGGATGGGTGGATGGATGGATGGGTGGGTGGATGGATGGATGGATGGAGGTCCCACCATAGCAGGGGGGCTGGGGGAGGTGCCACAAGGTCATGGAACCTCACTCACTCATCGACTTCTGGAACCCAAG
Seq C2 exon
GTGGAAGACAGCTACCCTGGGCAGGAGCGCTGGCTACGGGACTACTGTGCCTCAGGCCTATACATCCTCGTGTTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]