DreINT0063216 @ danRer10
Intron Retention
Gene
ENSDARG00000033953 | entpd2a.2
Description
ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
Coordinates
chr5:28963823-28965966:-
Coord C1 exon
chr5:28965847-28965966
Coord A exon
chr5:28963958-28965846
Coord C2 exon
chr5:28963823-28963957
Length
1889 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
ACTCCCTCTTTCTTTCTCAGATG
3' ss Score
12.21
Exon sequences
Seq C1 exon
GCATTTTCTGCATTTTATTACATTCATCAATTCTTGCAAAAAGCTGCAGGCATCACCATCACGTCTCCAGCGGATTTAGAGCACGCTGCCCAGTTTGTCTGCAACATGAGTTTTCAGCAG
Seq A exon
GTACCAGCCCATTGAGAGAATGTATTTATTTTAAAGGAACAGTTCACCAAAAGAATTATCTACACACTCTCAGAAATAAAGGTACAAAACCTGTCACTGAGGTGGTACCTTTTTAAAAGGTAGTTTTTTGTTTCTAACAGGTCCTTAAAGGCACATATTAATACCTAAAAAGTACAAATGTGTACCATAAAAGTACAAAAGTAAACCTTAAAGGCACAAAAAGTGTACCCTAAAGGTACTAATTGTCAAAACTGTACCTTTTGAAAAGGTACCACCCCATTGACAATTTGTGTACCTTTATTTCTGAGAGTGCATGTACACAAGGTCATCTGAGATGCAGGTGTTTTTTTAAATTCAATTAAATTTGCCTTTATTTGTATAGCGCTTTTACAATGTACATTGTGTCAAAGCAGCTTCACATTGAAGATCATACTAAACTGAAACAGTGTCAGTTCAGTTTTTAGCGTTTAAGTTCAGTTCAGTTTCGCTCAGTTCAGTGTGGTTTAATAGTCACTACTGAGAGTCCAAAGACTCTGAAGAGCAAATCCATCGATGCGTAGCTCTATTGATCCTAAACCATGAAAGCCAGTGGCGGTGGTGAGAAAAAAACTTCACTAATTGGCGAAAGTAAAGAATTAAAAAACCTTGAGAGAAACCAGGCTCAGTTGGGCACGATCATTTCTCCTCTGGCCAAACGTCTTGTGCAGAGCTGCAGTCTAGGCGCCGGAGGCTGGAAAGCTGGACCGAAGACTAGTCTGTCCCCGTTTTTCTTCAGTAAACAATTAAAGTAGAAGTAGCTGCTTCTTGGTGAACTACTAGCACTTTGGGAGTCACAAATCATGCAAAACACTGGCTACAATCATTGAGATTTTATGAAGCACGTTGATTGGTCCCTACAAGAAACTGAGTATTAATTAGTTATTCAATACAAGCTTCCATTTGTTGACTCTTAAAGGTAAGGTAGCTGATTTTAGAGAGGCTAAAACTGTTGCTAAAGCTAAAGACCCTGTCTGCCTTAGATTATCAGTTTAAAAAGCCATGCCTCCAGCAAAAAACAAAAACAGAACTTTGAAATGATGAGGGAGATAACCTCATCTCTCATTCACCAGCCAGAAACAATAAATAAATCATTGAATCGGATTAGACCATTAGCAGCTTGCTCAAAATAAAAAAAGAGGTAGGATAAATAACCTGTTTAAAGATTGACTAATCTATATTTACATCATGATGGAAAATTCAAAGTTTCCCTGCTTGAAAGCCTGAAAATAGTCACCAGCTTAGTTACTAAGTACCCTGCCTTTAAAATTAGCGGTTTACTTGCTATAGTTTCAGCTAAAACCTTTTTATGTTACACTAAAGAAAAATTTATCTTCATTTTGGATGGCTGCAGGATGAGTAAACTGAAAACAATTATTCCATCACTTTCGACTCACTTGTCAATCTAAGGTTGCATTTTCTTCTCTATACTGTAGATACAGCTCTTCTGAATACTTTGTATAGTCTGATTGAATCATTATAAACTAATGCAGTATTTCATCTTAGCTGTTTATGAAATTCAGTTCACTTAACCTTTATTTCTATAGCTCTTTTACAATGTAGACTGTTAAAGCAGCTCAACACAGAATTTGTTGTAAATTAATACTGTATCAGTCCAATTTTTAGAGTTGAAGTTCAGTTTGGTTCAGTTCAGTGTGGTTTAATTTTCACTGCTGAAAGTCCATCAATGCGCAGCTCCACAAGTCCCAAATTCAACCCAACACTACCAAGTGTATTACCAAGCTTGTCAGAGCTAAAAATTCTTTAGACCAGCCCTTAATTAAACTCAAATGTGATTAAACTTTAAATATTCCCTTTAGGCAATACCGTCTAACTCCCTCTTTCTTTCTCAG
Seq C2 exon
ATGCAGAACAAGTTTCCCACTGAGGGGGATCATTTGAGAGACTACTGTGCAGACTCTGTGCTTATGCGGGTGCTCCTGATTAATGGATATGGTTTCAGTGATCTCTCCTTTCCACACATCTCCTTTCAGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033953:ENSDART00000043259:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATCAATTCTTGCAAAAAGCTGC
R:
TCCTGAAAGGAGATGTGTGGA
Band lengths:
230-2119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]