BtaINT0056497 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106187312-106188416:+
Coord C1 exon
chr11:106187312-106187431
Coord A exon
chr11:106187432-106188281
Coord C2 exon
chr11:106188282-106188416
Length
850 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTCTCCCACTTGCATCCCAGCTG
3' ss Score
5.97
Exon sequences
Seq C1 exon
GCCTTCTCTGCTTTCTTCTACACGATGGACTTCCTGAGAACGGTGATGGGGCTGCCCGTGGCAACTCTGCAGCAACTAGAGGGGGCTGTAGTCACCCTCTGCAACCAGACATGGAGTGAG
Seq A exon
GTGAGGCCTGCCCCCACTCCACCAGGACTGTGCAGGGTGGGGCTGGGGTTTCTGCCAGCCAGCGCCAGGCTTCCCGATCTTTCTTTTGCTCTGTGAGTAGAGGGGTGTGGGGATACACTGCCAATCAGACTTGAAAAGTGGCCAGGCTACAGCCAGGAGCCCAGCAGTCAGATGAGATGGGATTGCAGAAGCCTCTCTGAGGCCTGACCCTAGATCCAGGATCTGGAGGGTGGAGAAGACAGCCAGTGCAATGGCCCTGGGGCAGCAGGGAGCTTGGAGTGGACAGGGCAGGGGAGAGTGTGGCTGGGAGAGCGTGGGGGAGAACAGACAACCCGGGGAGAAGTGGAAGGACCCGGACTCAGCAGGTAGAACAGGCAGGGCTTGGGGAGTCAGGAGTGGAAAGCAGCGGTGCTGATCCCCTGTGAAGTAAGATGGAGGGGTCTGGGCCCGCGGAGGAGGAGGGAATTCCGGAGAAACACTTGCGTGTCTGTGAGGCTCCTCCTGCTCTCTCTGTGTCTAGTCCCAGGCAGACTTGGGGAGCTGGGGAAGTGGGCTCAGGAGGCAAGCCCAGGACTCGGGGGCAAGCCGGGAGCTTCTGCTCCCCTGATCTCTGCAGGCCCGCTGCAGCCCTGCTCCCCGGGGGCCATGCCGCTGTTCCCTGGCCCTCAACCTCACAGGCACCGCGCCGCTGCCATCCAGAGGTCACGCTGCTCCTCCCCAGGAGAGAGCCCCGCCTGCTTCTTTCTGGGACCTGCAGTGCCGTCTCCAGCCCCGCACTACCTTTCTGTGTCTGGTGGGGCAGAGACCTCCGGGTGGTCGCTGGCCCTAGAGTCTCCCACTTGCATCCCAG
Seq C2 exon
CTGCAGGCTCGGGCGCCGGACGACCGAGCCCGCCTGCCCGACTACTGTGCCGGGGCGATGTTCGTGCAGCAGCTGCTGAGCCGCGGATACGGCTTCGACGAGCGCTCCTTCGGAGGCGTGACCTTCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125:ENSBTAT00000063714:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCTGCTTTCTTCTACACG
R:
CTTCTTCTGGAAGGTCACGCC
Band lengths:
255-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development