HsaINT1012588 @ hg38
Intron Retention
Gene
ENSG00000054179 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:HGNC Symbol;Acc:HGNC:3364]
Coordinates
chr9:137048941-137049989:-
Coord C1 exon
chr9:137049870-137049989
Coord A exon
chr9:137049076-137049869
Coord C2 exon
chr9:137048941-137049075
Length
794 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGTCCCGCCCGCGTCCCAGCTG
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCCTTCTCTGCCTTCTTCTACACTGTGGACTTTTTGCGGACTTCGATGGGGCTGCCCGTGGCCACCCTGCAGCAGCTGGAGGCAGCCGCAGTGAATGTCTGCAACCAGACCTGGGCTCAG
Seq A exon
GTGAGCCCCGCTCCCACTCCTTCAGGGCTGTGCGGAAGGGCTCAGCCTCCGCCTCCGCATGCCTCCCCAGCCCTGCATGGACAGGCCTCTCGGAGCACCCGCTGCAGTGGGGGCGATGGCAGGCATTAGGCTGACTCCAGAGGTGGCGTGGCTGTGGCCGGTAGGCTGTGAACAAGTCGGGCGGGTTGGAGAAGCTTCGCCAGGCCCGACCCTCATCCCAGATCTGGAGGGCAGGGGGAGGCCGGTGCCCAGGTTTCTGGCTTCTGCCACTGGTTCCCTCCATGGTACCACACAAGGGAAGATGGAAGTGGGTCTGGGCACCGGGAGTGTGCCCACCGGAGACTCCAAGAGAAACGTACGAGTCGTCCCAGGACCGGGGTGGTGAGCGAGGCCCCATTTTGTCCTCCCAGGGCCTAGTCTCAGACAGACTGGGGTGAGGGAGGTGGGGACAGGCGGCGAGCCAGCGGGCAGACTCAGGCCTGGAGCTCGTCCTGTTCCCCTGGCCACACACCAAGGTGTTGCTGCCTCCTGCTCCCTGGTGGCCATGCCTGCTGTCCCTCCTCACTGGCCTTCCAGGCATGGGCGCTGGCTGGGGAGGGATGGAAGCGTGCCCTGCCGGGGGTGCCCCTCGGACTCGGTCTTGCCATTCGTGTCCGGGCCTGTGTGGTGGTCTCTGGCCTCGCACGGCCCGTGTGTGTCTGGGGAGGGGTGAAGCACGCCGCCGGCCCCCTCTCCCCGTGGGGCCGAGACCTCCTGGTGGTCGCCTGCCTGACGGTGTCCCGCCCGCGTCCCAG
Seq C2 exon
CTGCAAGCTCGGGTGCCAGGGCAACGGGCCCGCCTGGCCGACTACTGCGCCGGGGCCATGTTCGTGCAGCAGCTGCTGAGTCGCGGCTACGGCTTCGACGAGCGCGCCTTCGGCGGCGTGATCTTCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000054179:ENST00000355097:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCTGCCTTCTTCTACAC
R:
TTCTTCTGGAAGATCACGCCG
Band lengths:
254-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains