HsaINT0056494 @ hg19
Intron Retention
Gene
ENSG00000054179 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:HGNC Symbol;Acc:3364]
Coordinates
chr9:139943393-139944441:-
Coord C1 exon
chr9:139944322-139944441
Coord A exon
chr9:139943528-139944321
Coord C2 exon
chr9:139943393-139943527
Length
794 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGTCCCGCCCGCGTCCCAGCTG
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCCTTCTCTGCCTTCTTCTACACTGTGGACTTTTTGCGGACTTCGATGGGGCTGCCCGTGGCCACCCTGCAGCAGCTGGAGGCAGCCGCAGTGAATGTCTGCAACCAGACCTGGGCTCAG
Seq A exon
GTGAGCCCCGCTCCCACTCCTTCAGGGCTGTGCGGAAGGGCTCAGCCTCCGCCTCCGCATGCCTCCCCAGCCCTGCATGGACAGGCCTCTCGGAGCACCCGCTGCAGTGGGGGCGATGGCAGGCATTAGGCTGACTCCAGAGGTGGCGTGGCTGTGGCCGGTAGGCTGTGAACAAGTCGGGCGGGTTGGAGAAGCTTCGCCAGGCCCGACCCTCATCCCAGATCTGGAGGGCAGGGGGAGGCCGGTGCCCAGGTTTCTGGCTTCTGCCACTGGTTCCCTCCATGGTACCACACAAGGGAAGATGGAAGTGGGTCTGGGCACCGGGAGTGTGCCCACCGGAGACTCCAAGAGAAACGTACGAGTCGTCCCAGGACCGGGGTGGTGAGCGAGGCCCCATTTTGTCCTCCCAGGGCCTAGTCTCAGACAGACTGGGGTGAGGGAGGTGGGGACAGGCGGCGAGCCAGCGGGCAGACTCAGGCCTGGAGCTCGTCCTGTTCCCCTGGCCACACACCAAGGTGTTGCTGCCTCCTGCTCCCTGGTGGCCATGCCTGCTGTCCCTCCTCACTGGCCTTCCAGGCATGGGCGCTGGCTGGGGAGGGATGGAAGCGTGCCCTGCCGGGGGTGCCCCTCGGACTCGGTCTTGCCATTCGTGTCCGGGCCTGTGTGGTGGTCTCTGGCCTCGCACGGCCCGTGTGTGTCTGGGGAGGGGTGAAGCACGCCGCCGGCCCCCTCTCCCCGTGGGGCCGAGACCTCCTGGTGGTCGCCTGCCTGACGGTGTCCCGCCCGCGTCCCAG
Seq C2 exon
CTGCAAGCTCGGGTGCCAGGGCAACGGGCCCGCCTGGCCGACTACTGCGCCGGGGCCATGTTCGTGCAGCAGCTGCTGAGTCGCGGCTACGGCTTCGACGAGCGCGCCTTCGGCGGCGTGATCTTCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000054179-ENTPD2:NM_203468:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCTGCCTTCTTCTACAC
R:
TTCTTCTGGAAGATCACGCCG
Band lengths:
254-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)