GgaINT0124641 @ galGal4
Intron Retention
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:918125-918511:-
Coord C1 exon
chr17:918401-918511
Coord A exon
chr17:918260-918400
Coord C2 exon
chr17:918125-918259
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GTCCCCTGATGGGTCTGAAGCTG
3' ss Score
2.25
Exon sequences
Seq C1 exon
GCCTTTGCTGGGTTCTACTACACCTTCTCCTTCCTGAACCTGACCGGCCAGCAGTCTCTAAGCCATGTCAATGCCACAGTCTGGGACTTCTGCAACAAGAACTGGTCCGAG
Seq A exon
GTGAGAGCCTTGTAAAGGGCACCAAGGAGCCCTCTGCCTGTCTTCTCCCAAATCCCTGCCCAGAAAGCACATGCTCTGCTGTTCTCTGGGCCAGGGAGGGTTTTGTTCCTCATTTTGCTGTGTCCCCTGATGGGTCTGAAG
Seq C2 exon
CTGGTGGAGACCTTCCCACAGAATAAGGAGCACCTACACACATACTGCGTGGTGGGACTTTACATCTTGACACTGCTGGTCGATGGCTATAAGTTTGATGAGCACACGTGGAGCAACATCCACTTCAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932:ENSGALT00000014516:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGCTGGGTTCTACTACA
R:
CTGGCTGAAGTGGATGTTGCT
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]