GgaALTA0004689-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:918125-918511:-
Coord C1 exon
chr17:918401-918511
Coord A exon
chr17:918239-918306
Coord C2 exon
chr17:918125-918238
Length
68 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCTGCTGTTCTCTGGGCCAGGGA
3' ss Score
7.79
Exon sequences
Seq C1 exon
GCCTTTGCTGGGTTCTACTACACCTTCTCCTTCCTGAACCTGACCGGCCAGCAGTCTCTAAGCCATGTCAATGCCACAGTCTGGGACTTCTGCAACAAGAACTGGTCCGAG
Seq A exon
GGAGGGTTTTGTTCCTCATTTTGCTGTGTCCCCTGATGGGTCTGAAGCTGGTGGAGACCTTCCCACAG
Seq C2 exon
AATAAGGAGCACCTACACACATACTGCGTGGTGGGACTTTACATCTTGACACTGCTGGTCGATGGCTATAAGTTTGATGAGCACACGTGGAGCAACATCCACTTCAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932-11-15,11-14,11-13-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAGTCTCTAAGCCATG
R:
CTGGCTGAAGTGGATGTTGCT
Band lengths:
176-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]