HsaINT0056565 @ hg19
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140329656-140330281:-
Coord C1 exon
chr9:140330171-140330281
Coord A exon
chr9:140329791-140330170
Coord C2 exon
chr9:140329656-140329790
Length
380 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
CTTGGTCTCCTGGGCCCCAGGTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCCTTCTCCAACTTCTACTACACCTTCCACTTCCTGAACCTCACCTCCAGGCAGCCCCTGAGCACGGTCAACGCCACCATCTGGGAGTTTTGCCAGAGGCCCTGGAAACTG
Seq A exon
GTGGGTGGGCCCTGGGCTCCCTGGCTGCAGCGAGGGTCCCTGAGGGTACAGGGCTGCCTCGGGCAGGATGCTGGAGCCTCATTCTGGGCAGCACGGCCAGCAGGGCCGGGGGAGGCAAGGGCAGAGGACAGCTCCAGGCCGTGCCACTCCAGGTAGGAGGCTGTGGCCACGGCCGCAGCTGGGCCCAGCCTCTGGCCCGCCAAGAAGGGGCCGCAACCCGCACCACGTAACTGGTCGGTGGGGCCAGGGAGGGGCTCTCTACCACTGCCCGGCACCCTCTTGTTGTCTGCGTGCTCAGGTTGGCCAGGACAGATGGGGCGGTCCCCGCATGACTGGGGATCAGGGGCCCTCACCTCGCCTCTTGGTCTCCTGGGCCCCAG
Seq C2 exon
GTGGAGGCCAGCTACCCTGGGCAGGACCGCTGGCTGCGGGACTACTGTGCCTCAGGCCTGTACATCCTCACCCTCCTGCACGAGGGCTACGGGTTCAGCGAGGAGACCTGGCCCAGCCTCGAGTTCCGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-ENTPD8:NM_001033113:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(1.5=11.1),PF0115012=GDA1_CD39=FE(56.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCCAACTTCTACTACACC
R:
TCGGAACTCGAGGCTGGG
Band lengths:
240-620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)