DreINT0063292 @ danRer10
Intron Retention
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41056690-41057067:+
Coord C1 exon
chr6:41056690-41056800
Coord A exon
chr6:41056801-41056932
Coord C2 exon
chr6:41056933-41057067
Length
132 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ACAGTAATTTTCTTCTGCAGCTA
3' ss Score
8.55
Exon sequences
Seq C1 exon
GCTTTTTCTGCATACTTCTACACATTTGACTTCCTCGGTCTTACTCCAAAAGCTCCACTAACAAAAGTTCTTTCCACTATTGACACTCTCTGCAGCAAAAACTGGACAGCT
Seq A exon
GTGAGTACACACAGACGATTACAATACATGATCATCCTGTATATTAGTAAACAGCCTGTTGAGATTAGTCTTAATATTTTTGTAATGATGATTCTCTAAATTCATGTTAATGACAGTAATTTTCTTCTGCAG
Seq C2 exon
CTAACTGCTGAAAATCCATCCATTAAGCCAAAATACCTGAAAGATTATTGTGCTTCTGGTCACTATATTACTACTATTCTCTTGAAAGGATACAAGTTCAATAACACCTGGGATCAAATTTCTTTTGTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565:ENSDART00000011245:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTTCTGCATACTTCTACACA
R:
AAAAGAAATTTGATCCCAGGTGTT
Band lengths:
237-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]