HsaEX0022567 @ hg19
Exon Skipping
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140329656-140330728:-
Coord C1 exon
chr9:140330465-140330728
Coord A exon
chr9:140330171-140330281
Coord C2 exon
chr9:140329656-140329790
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCCCTCTCACTCAGGCC
3' ss Score
8.63
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
AGCCGCCCGGCTGCCCTGCTCCGTCACCCGTGCTACCTCAGCGGCTACCAGACCACACTGGCCCTGGGCCCGCTGTATGAGTCACCCTGTGTCCACGCCACGCCCCCGCTGAGCCTCCCCCAGAACCTCACAGTTGAAGGGACAGGCAACCCTGGAGCCTGCGTCTCAGCCATCCGGGAACTTTTCAACTTCTCCAGCTGCCAGGGCCAGGAGGACTGCGCCTTTGACGGGGTCTACCAGCCCCCGCTGCGGGGCCAGTTCTAT
Seq A exon
GCCTTCTCCAACTTCTACTACACCTTCCACTTCCTGAACCTCACCTCCAGGCAGCCCCTGAGCACGGTCAACGCCACCATCTGGGAGTTTTGCCAGAGGCCCTGGAAACTG
Seq C2 exon
GTGGAGGCCAGCTACCCTGGGCAGGACCGCTGGCTGCGGGACTACTGTGCCTCAGGCCTGTACATCCTCACCCTCCTGCACGAGGGCTACGGGTTCAGCGAGGAGACCTGGCCCAGCCTCGAGTTCCGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(26.9=100),PF0115012=GDA1_CD39=PU(2.6=2.3)
A:
PF0115012=GDA1_CD39=FE(8.4=100)
C2:
PF0115012=GDA1_CD39=PD(1.5=11.1),PF0115012=GDA1_CD39=FE(56.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTCACCCTGTGTCCACG
R:
TGAGGATGTACAGGCCTGAGG
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)