RnoEX0032276 @ rn6
Exon Skipping
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2292321-2298955:+
Coord C1 exon
chr3:2292321-2292584
Coord A exon
chr3:2292770-2292880
Coord C2 exon
chr3:2298821-2298955
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCCCCCCCCCCAGGCA
3' ss Score
11.8
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
AGCAGCCAGGTAGCCCGGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCACACTGTCACTGGCTTCCTTGTATGATTCACCCTGCGTCCACACTCCAGATTCCCTGAACTACACCCAGAACCTCACAGTTGAAGGGATAGGCAACCCTGGGAACTGTGTGGCAGCCCTCCGGGGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAAGAGGATTGTGCTTTCAATGGAGTCTACCAGCCTCCCGTGCATGGCCAGTTCTAT
Seq A exon
GCATTTTCCAACTTTTACTACACCTTCCAGTTCCTCAACCTCACCTCCAGGCAGCCACTGAACATCGTCAATGACACTATCTGGAAGTTCTGTCAGAAACCCTGGAGACTG
Seq C2 exon
GTGGAAGACAGCTACCCTGGGCAGGAGCGCTGGCTACGGGACTACTGTGCCTCAGGCCTATACATCCTCGTGTTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.3=100)
A:
PF0115012=GDA1_CD39=FE(8.4=100)
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGCAACCCTGGGAACTGT
R:
TTCTGGAACTGGATGTTGGGC
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]