MmuEX0016934 @ mm10
Exon Skipping
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:25083825-25084860:+
Coord C1 exon
chr2:25083825-25084088
Coord A exon
chr2:25084261-25084371
Coord C2 exon
chr2:25084726-25084860
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTCTACTTCCCCAGGCA
3' ss Score
8.01
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
AGCAGCCAGGTGGCCCCGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCATACTGCCACTGAGTTCCTTGTATGACTCACCCTGCATCCACACTACAGATTCCCTGAACCACACCCAGAACCTCACAGTTGAAGGGACAGGCGACCCTGGGAACTGTGTGGTAGCTCTCCGAAGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAGAAGGATTGTGCTTTCAATGGCATCTACCAGCCTCCTGTGCACGGCCAGTTCTAT
Seq A exon
GCATTTTCCAACTTTTACTACACCTTCCATTTCCTGAACCTCACGTCCAGGCAATCACTGAACACTGTCAACGACACTGTCTGGAAGTTCTGTCAGAAACCCTGGAAACTG
Seq C2 exon
GTGGAAGTCAGCTATCCTGGGCAGGAGCGCTGGTTACGGGACTACTGTGCCTCGGGTCTGTACATCCTCGTATTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.1=100)
A:
PF0115012=GDA1_CD39=FE(8.3=100)
C2:
PF0115012=GDA1_CD39=PD(1.6=11.1),PF0115012=GDA1_CD39=FE(57.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTGAACCACACCCAGA
R:
AATTTGTAGCCCTCCAGCAGC
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types