DreEX0030107 @ danRer10
Exon Skipping
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41055000-41057067:+
Coord C1 exon
chr6:41055000-41055266
Coord A exon
chr6:41056690-41056800
Coord C2 exon
chr6:41056933-41057067
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATGTGTAATCTCCTTCTCAGGCT
3' ss Score
7.56
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AATGCGGGATCATCATCATCTATCAGTCACCCCTGCTACCACAAAGGATATAATCTCAATCTTACTCTGGCTGAACTTTACAACTCCCCTTGTGTGGTCCCACCAAGCAGTTTCAACCCCAAGGATACAATCCTTTTTAAGGGAACAGGAAATTCATCCCTTTGCCTATCTCTAATAGAAAACATTGTTAATCTCACTGGTTGTGCATTATCCCCTGACTGTGGCTTCAATGGCATCTATCAGCCTCCAGTCAACGGCGAATTCTTT
Seq A exon
GCTTTTTCTGCATACTTCTACACATTTGACTTCCTCGGTCTTACTCCAAAAGCTCCACTAACAAAAGTTCTTTCCACTATTGACACTCTCTGCAGCAAAAACTGGACAGCT
Seq C2 exon
CTAACTGCTGAAAATCCATCCATTAAGCCAAAATACCTGAAAGATTATTGTGCTTCTGGTCACTATATTACTACTATTCTCTTGAAAGGATACAAGTTCAATAACACCTGGGATCAAATTTCTTTTGTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.5=100)
A:
PF0115012=GDA1_CD39=FE(8.4=100)
C2:
PF0115012=GDA1_CD39=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCCCCTTGTGTGGTCC
R:
ACCAGAAGCACAATAATCTTTCAGGT
Band lengths:
248-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]