MmuEX0016934 @ mm9
Exon Skipping
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24939345-24940380:+
Coord C1 exon
chr2:24939345-24939608
Coord A exon
chr2:24939781-24939891
Coord C2 exon
chr2:24940246-24940380
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTCTACTTCCCCAGGCA
3' ss Score
8.01
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
AGCAGCCAGGTGGCCCCGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCATACTGCCACTGAGTTCCTTGTATGACTCACCCTGCATCCACACTACAGATTCCCTGAACCACACCCAGAACCTCACAGTTGAAGGGACAGGCGACCCTGGGAACTGTGTGGTAGCTCTCCGAAGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAGAAGGATTGTGCTTTCAATGGCATCTACCAGCCTCCTGTGCACGGCCAGTTCTAT
Seq A exon
GCATTTTCCAACTTTTACTACACCTTCCATTTCCTGAACCTCACGTCCAGGCAATCACTGAACACTGTCAACGACACTGTCTGGAAGTTCTGTCAGAAACCCTGGAAACTG
Seq C2 exon
GTGGAAGTCAGCTATCCTGGGCAGGAGCGCTGGTTACGGGACTACTGTGCCTCGGGTCTGTACATCCTCGTATTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.1=100)
A:
PF0115012=GDA1_CD39=FE(8.3=100)
C2:
PF0115012=GDA1_CD39=PD(1.6=11.1),PF0115012=GDA1_CD39=FE(57.1=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTGAACCACACCCAGA
R:
AATTTGTAGCCCTCCAGCAGC
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: