GgaEX6014738 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJE7]
Coordinates
chr17:934098-935596:-
Coord C1 exon
chr17:935324-935596
Coord A exon
chr17:935025-935135
Coord C2 exon
chr17:934098-934235
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTACCTCTTGCCTTTCAGGCC
3' ss Score
10.73
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GAGTCGCCCTCCAGCACGCTAGTTGAACATCCTTGCTACCCCAAAGACTACAAGGAAACCATCTCGCTGTCTTCCTTCCGCACCAGCCCCTGCACCAACCAGAGTGACCCACGCCTGCCTCTCGATGACAGAAACGTGACCCTGGAGGGCAGGAGCAATGCCAGCGGGTGTTTAGTCGCTGTCAAGAAGCTCTTCAACTTCTCGGCATGTGGACAGAGCCAGGACTGCTCCTTCGATGGCATCTACCAGCCCCCCGTCAGCGGGCAGTTCTTT
Seq A exon
GCCTTTTCTGCTTTTTACTACAACTTCAAGTTTCTCAACCTGACGGAGGGACAGTCACTGGCCACCGTCAGGGAGACCATTGAGCATTTCTGTGCAAGAACCTGGGAGGAT
Seq C2 exon
CTGTCTTCTAATTACCCCGAAGAGAATCCTGAGCGACTGCCTAAATACTGTGCCAATGCCAACTACATCCTCACACTCCTCCTTGATGCCTACAAGTTCAACGAGACCAGCTGGAACAACATCTTCTTCCAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.8=100)
A:
PF0115012=GDA1_CD39=FE(8.3=100)
C2:
PF0115012=GDA1_CD39=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCGCTGTCTTCCTTCCG
R:
TAGGCAGTCGCTCAGGATTCT
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]