GgaEX6014735 @ galGal4
Exon Skipping
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:918125-919280:-
Coord C1 exon
chr17:919017-919280
Coord A exon
chr17:918401-918511
Coord C2 exon
chr17:918125-918259
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCATCACTCTTCTTCCCCAGGCC
3' ss Score
10.28
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GACGGCTCGTATGTCCAGAATATATCACACCCCTGCTACCCCAAGGGATACCAGGAGAACATCACCATAGCAGAGATCTACGACAGTCCCTGTGTCCCCACCCCAAGCATGCTCAGCCCTGCACAGATCCTCACAGTAACAGGGACAGGGAGCCCAGCGGCGTGCCGCACTGCCATCCTGAAGCTCTTCAACTTCACCTGTGGGGCCAACAGGACGTGTGGCTTCGACGGGGTCTATCAGCCGCCCGTGCGGGGACAGTTCTTT
Seq A exon
GCCTTTGCTGGGTTCTACTACACCTTCTCCTTCCTGAACCTGACCGGCCAGCAGTCTCTAAGCCATGTCAATGCCACAGTCTGGGACTTCTGCAACAAGAACTGGTCCGAG
Seq C2 exon
CTGGTGGAGACCTTCCCACAGAATAAGGAGCACCTACACACATACTGCGTGGTGGGACTTTACATCTTGACACTGCTGGTCGATGGCTATAAGTTTGATGAGCACACGTGGAGCAACATCCACTTCAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932-'10-14,'10-12,11-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.4=100)
A:
PF0115012=GDA1_CD39=FE(8.4=100)
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGACAGTCCCTGTGTCC
R:
AAAGTCCCACCACGCAGTATG
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]