BtaINT0056554 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030246 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr11:105701054-105701602:+
Coord C1 exon
chr11:105701054-105701314
Coord A exon
chr11:105701315-105701491
Coord C2 exon
chr11:105701492-105701602
Length
177 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGC
5' ss Score
4.3
3' ss Seq
CACATCGCCCTTCCCCACAGGCT
3' ss Score
10.48
Exon sequences
Seq C1 exon
GCCAGCACGGGCCTCCTGATCCGCCACCCCTGCTACCACAGCGGCTACCGGGGCACGCTGGCCCTGGCGTCCCTGTATGAGTCGCCCTGCGCCCCGGCAGCGCCCCCCGACCTCAGCCAGAACCTCACCGTGGAGGGCACGGGGAACCCCGGGGCCTGCGTCGAGGCCCTCCGGAAGCTCTTCAATTTCTCCAGCTGTGACGGCCGAGAAGACTGTGCCTTCGCCGGGGTCTACCAGCCCCCCGTGCAGGGCCAGTTCTAC
Seq A exon
GTGAGCCCCCCGGCCTGCCCTTGGGACCCAGCTTCCTCCCGGAGGCTGAGGGTCCCAACCCCTGGCGCCCTTGGGGAGCCTGGGACCCCGGGTGGGGAGGGTTAGGGCTGCACCTGGCTCGCCCTGGGCCCCTGCCTCTGGGCACCACCCACAAGGGCACATCGCCCTTCCCCACAG
Seq C2 exon
GCTTTCTCCAACTTCTACTACACCTTCAACTTCCTGAACCTCACCTCCAAGCCGTCACTGAGTGGGGCCAACGCCACCATCTGGGAGTTCTGCCTGCGGCCCTGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030246:ENSBTAT00000016080:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGTATGAGTCGCCCT
R:
TGGAGGTGAGGTTCAGGAAGT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development