MmuINT0057747 @ mm10
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:25083825-25084371:+
Coord C1 exon
chr2:25083825-25084088
Coord A exon
chr2:25084089-25084260
Coord C2 exon
chr2:25084261-25084371
Length
172 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGC
5' ss Score
4.2
3' ss Seq
AGCCTTCTCTACTTCCCCAGGCA
3' ss Score
8.01
Exon sequences
Seq C1 exon
AGCAGCCAGGTGGCCCCGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCATACTGCCACTGAGTTCCTTGTATGACTCACCCTGCATCCACACTACAGATTCCCTGAACCACACCCAGAACCTCACAGTTGAAGGGACAGGCGACCCTGGGAACTGTGTGGTAGCTCTCCGAAGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAGAAGGATTGTGCTTTCAATGGCATCTACCAGCCTCCTGTGCACGGCCAGTTCTAT
Seq A exon
GTAAGCATGGCTTCCCAAATCCTGGCTTCTTTCTGGAGCCCCAGAGGCCATAAGGACAGGTTGAACAGGAGGTGCCCTGGCTGGCTCTTAGGGACTTCAGTGCCTATGGGGACACCTGACTGTCATACCGCAGCCCTCCCTCAGGCTTGCACAGCCTTCTCTACTTCCCCAG
Seq C2 exon
GCATTTTCCAACTTTTACTACACCTTCCATTTCCTGAACCTCACGTCCAGGCAATCACTGAACACTGTCAACGACACTGTCTGGAAGTTCTGTCAGAAACCCTGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813:ENSMUST00000044078:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCTGCATCCACACTACA
R:
GTTCAGTGATTGCCTGGACGT
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types