RnoINT0055228 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2292321-2292880:+
Coord C1 exon
chr3:2292321-2292584
Coord A exon
chr3:2292585-2292769
Coord C2 exon
chr3:2292770-2292880
Length
185 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGC
5' ss Score
4.2
3' ss Seq
CTCCCCCTCCCCCCCCCCAGGCA
3' ss Score
11.8
Exon sequences
Seq C1 exon
AGCAGCCAGGTAGCCCGGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCACACTGTCACTGGCTTCCTTGTATGATTCACCCTGCGTCCACACTCCAGATTCCCTGAACTACACCCAGAACCTCACAGTTGAAGGGATAGGCAACCCTGGGAACTGTGTGGCAGCCCTCCGGGGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAAGAGGATTGTGCTTTCAATGGAGTCTACCAGCCTCCCGTGCATGGCCAGTTCTAT
Seq A exon
GTAAGCATGGCTTCTCACATTCTAGCTTCTTTCTGGAGCCAGGGGCCCTACGGACAGGTTGAACAGGAGGTGCCCTGGCTGGCTCTTAGGGCCTCCAGCACCTGCGGGACACCTGACTAAAGTGTTGTATTGCAGGCCTCCTTCAGGCTTGCACAGCCTTCTCTACTCCCCCTCCCCCCCCCCAG
Seq C2 exon
GCATTTTCCAACTTTTACTACACCTTCCAGTTCCTCAACCTCACCTCCAGGCAGCCACTGAACATCGTCAATGACACTATCTGGAAGTTCTGTCAGAAACCCTGGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTCCACACTCCAGATTC
R:
TTGACGATGTTCAGTGGCTGC
Band lengths:
249-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]