MmuEX0028075 @ mm9
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49025429-49087368:+
Coord C1 exon
chr2:49025429-49025533
Coord A exon
chr2:49035586-49035842
Coord C2 exon
chr2:49087192-49087368
Length
257 bp
Sequences
Splice sites
3' ss Seq
GTGGCTATGGATTCCAGAAGATT
3' ss Score
-3.4
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGAGAAGCAGCACTCCCTTGCTGAGCACAGTGCCCCTGGACACTTGCCACCATTACACTGTTGGAGCTCACGCTTGCTATGCTTGTCCCAGTTTCTCTCCAGAAG
Seq A exon
ATTGAATCTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTGGGATTAAAGGTGTGGCGGAACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTGCTCCTTCGCCTGCTTGCTGTGTGAGACTAAGTAACTGCTAGATCCTTGGACTTCCATTCAGAGCTGCGACTGAACCATTGTTGGGAATTGGGCTGCCGACT
Seq C2 exon
AAGTTGGAAACCTAACCGCCTACAGAGGCCAGAATGGTGGAATGAAACAGGAAGCCGCTGAAGGGAGCTGGAAAGCCAAGCCCTTTCTGGAGGAGCAGCCCCTGCTCTGTTCCAGATAACCGTGGCGAGGCAGAAATGTTGACTCACTCTTACCGCACTCACTGTCCAGTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-'17-25,'17-23,19-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCAGCACTCCCTTGC
R:
AGAAACTGGACAGTGAGTGCG
Band lengths:
278-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: