MmuINT0140196 @ mm9

Intron Retention

Gene

ENSMUSG00000026927 | Sdccag3

Description

serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]

Coordinates

chr2:26241018-26241583:-

Coord C1 exon

chr2:26241510-26241583

Coord A exon

chr2:26241130-26241509

Coord C2 exon

chr2:26241018-26241129

Length

380 bp

Sequences

Splice sites

5' ss Seq

AATGTATGT

5' ss Score

5.87

3' ss Seq

TCAGTTTTTCCTCTACTGAGGGT

3' ss Score

-7.2

Exon sequences

Seq C1 exon

CTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAATGAGGTTCAGAGCTTCTCTGAAACTCAAACAGAAAT

Seq A exon

GTATGTAAACTTGTAGTTGGGCATCACCTTAAACCCTCCTCTACCATTCAGGGAACCTGGCTCCACGGGCTGAGGAGCCTTGCTGCTTGTCATCCCTAGACCTAAAGCCGCAGACGCACTTTCCTGCTCTGCTTTAGTCTTTCTAAGACAGTCGGCTGGATTTTGTCTTGGTTGGCAGAGCTTGAGAAAATGGTCTCTGGGCCTTCTATTGGGAGCATAAAGCTACTCGGGCTGGAGGCCATTGACATCCTGTGGCTGCCTGAAGCAGCTGCTCCATCCATAGGTTCTAGTGGGTTTCACCAGCTAATCAGACTAAAGTGCTGTTGGAAGCATTCTTGACAGTGGCCTGGAGTACTTACCTCAGTTTTTCCTCTACTGAG

Seq C2 exon

GGTGAGGACACTCGAACGGAAGTTGGAGGCGAAGATGATCAAGGAGGAGAGTGACTTCCATGACCTCGAGTCAGTAGTCCAGCAAGTCGAACAGAACCTTGAACTGATGACC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000026927-Sdccag3:NM_001085408:4

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.480 A=NA C2=0.263

Domain overlap (PFAM):

C1:

PF0076914=ERM=FE(13.3=100),PF0026115=Tropomyosin=FE(12.9=100),PF131661=AAA_13=FE(20.0=100),PF138631=DUF4200=FE(23.3=100),PF052669=DUF724=PU(21.0=84.0)

A:

NA

C2:

PF0076914=ERM=FE(20.6=100),PF0026115=Tropomyosin=FE(19.9=100),PF131661=AAA_13=FE(30.8=100),PF138631=DUF4200=FE(35.9=100),PF052669=DUF724=FE(37.0=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000109737