HsaINT0146371 @ hg19

Intron Retention

Gene

ENSG00000165689 | SDCCAG3

Description

serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]

Coordinates

chr9:139299543-139300430:-

Coord C1 exon

chr9:139300357-139300430

Coord A exon

chr9:139299655-139300356

Coord C2 exon

chr9:139299543-139299654

Length

702 bp

Sequences

Splice sites

5' ss Seq

AATGTATGT

5' ss Score

5.87

3' ss Seq

TCGGGTTTTTCTTTAACAAGGGT

3' ss Score

3.9

Exon sequences

Seq C1 exon

CTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATGAGGTTCAGAGCTTCTCTGAAGCTCAAACAGAAAT

Seq A exon

GTATGTAAGCTTTTAGTTAGGAATGCAATCCACAACATCTAATACACAGGGAAATCCGTTTTTAAATGATAATGAAGTAATCAGAGTCAAACCAGATCTGGGTTTTATTGTATATAAATGTTCAGCATCAAACACATTTCTGTGTTCTGCCTAAAAGTTTATTTTGAGACAGTCTTGCCGTGTCACCCAGGCTCGGGTGCAGTGGCGCAATCACGGCTCACTGCAGCCTTGACCTCCTTGGCTCCAGCAATCCTCCCATCTCAGCCTCCTGAGTAGCTGGGACCACAGGCGTTTGCCACTGCACCTGGCTAATTTTTAAATCTTATTTTTGTAGAGACAGGGTCTCACTATGTTGCCCAGGCTTGTCTCAAACTCCTCGGCTCAAGGAATCCTCCTGCCTCAGGCTCCTAAAGTGTTGGGATTATAGGCATGAGCCACGGCGCCTGGCCAAGGTTTATTTTAAACTTTAGGCAAAAAGCCACCAAACACCTTGTTGGAGCAGCAGTGCTGTGAGAGCCGCTCCCTGCACGCCTGCCTGGTGGCTACAGGTCCAGGCCTGAGGCTGCCGCTGCCTCCCCTCTGTGCCTGAGACCCATTCCATCACAGGCTCTTAGCGGGTTTTATCTGGCTCATGAGGTATCTTTTTGTAGTCCTCTTAAAAGTAGCCACAGAAATTAACAACTCGGGTTTTTCTTTAACAAG

Seq C2 exon

GGTGAGGACGCTTGAGCGGAAGTTAGAAGCAAAAATGATCAAGGAGGAAAGCGACTACCACGACCTGGAGTCGGTGGTTCAGCAGGTGGAGCAGAACCTGGAGCTGATGACC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000165689-SDCCAG3:NM_001039708:4

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.183 A=NA C2=0.074

Domain overlap (PFAM):

C1:

PF0076914=ERM=FE(13.4=100),PF131661=AAA_13=FE(14.2=100),PF0026115=Tropomyosin=FE(21.6=100),PF143571=DUF4404=FE(36.4=100),PF052669=DUF724=PU(21.1=80.0)

A:

NA

C2:

PF0076914=ERM=FE(20.7=100),PF131661=AAA_13=FE(21.9=100),PF0026115=Tropomyosin=FE(33.3=100),PF143571=DUF4404=FE(56.1=100),PF052669=DUF724=FE(38.9=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000349929