MmuEX0041368 @ mm9
Exon Skipping
Gene
ENSMUSG00000026927 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
Coordinates
chr2:26240603-26242382:-
Coord C1 exon
chr2:26242282-26242382
Coord A exon
chr2:26241510-26241583
Coord C2 exon
chr2:26240603-26240665
Length
74 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTTTTTTCTACAGCTG
3' ss Score
10.83
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
TTGTGGAGAGGAGCTGCAGTCATCTACTTCCTGGGTGGCCTGGGCTCAATGCCACGGACAAGGCAGTTAGTCATATAATGGCTTGATGTAGAATTGCCCTG
Seq A exon
CTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAATGAGGTTCAGAGCTTCTCTGAAACTCAAACAGAAAT
Seq C2 exon
AAACGGGCTGTAAAAGCAGAAAATCATGTCTTGAAGCTGAAACAGGAAATAAATTTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026927-'10-10,'10-7,12-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.480 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0076914=ERM=FE(13.3=100),PF0026115=Tropomyosin=FE(12.9=100),PF131661=AAA_13=FE(20.0=100),PF138631=DUF4200=FE(23.3=100),PF052669=DUF724=PU(21.0=84.0)
C2:
PF0076914=ERM=FE(11.1=100),PF0026115=Tropomyosin=FE(10.8=100),PF131661=AAA_13=FE(16.7=100),PF138631=DUF4200=FE(19.4=100),PF052669=DUF724=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGAGAGGAGCTGCAGTC
R:
AGCAAATTTATTTCCTGTTTCAGCT
Band lengths:
160-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types