DreEX0064676 @ danRer10
Exon Skipping
Gene
ENSDARG00000095515 | sdccag3
Description
serologically defined colon cancer antigen 3 [Source:ZFIN;Acc:ZDB-GENE-060526-242]
Coordinates
chr5:50554017-50559023:-
Coord C1 exon
chr5:50558619-50559023
Coord A exon
chr5:50556521-50556594
Coord C2 exon
chr5:50554017-50554156
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTATTGTGCTTCAGCTC
3' ss Score
8.28
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGTACAATGGTGCATGCCTAGTCGAGCAGGACTATAACACCTCTATAGACTTTGCTACCAAGGGTCCTTTTTTCACTGATCCCTCTGCACTCTGTCAGCCTCCTGAAAGTGAACCCGACGAGACATGGATTGAAAGCCACCAACGGTCAGCCATTGAAGGTTCTCCTGACTTTGAACTATGTGGGGCATCAGACATCAGTGCTTACTCTGAGCAGTCATCTCTGTGCAGTGATGAGAGAGAAGCGGCTGAATGGGAACTGGGTCAGTCTGACTTCCTGCCAAAAAAGCACTTATCCAGAATCAGCACTGGAAGCTATGAGGGGGATGAAGAGACTTCAGTGATTGATATTTCCTTCCATCATAAGAGAGGCAATGCTGAAAATGGCACAAAGAATCTCCAGCAG
Seq A exon
CTCAGAGAAGAAAATTCCCTTCTCAGAAAGCAAGTCAAAGAGCTAGTTAGAATGTCGGAAACTGACTCTAGAAG
Seq C2 exon
GGCCAGCTTGAAGACTATAAAAGTGAAAACGAAAGGCTGAGACTTGGAGAAACGGCAGCCTTAGCCACAATGAGACACAATGCGCAAGTGGCCTCTGAATACCTCAACAAAGCAGCTCAAGATGCAGAGATCTCCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095515_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.560 C2=0.319
Domain overlap (PFAM):
C1:
PF154191=LNP1=PU(19.9=20.7),PF149921=TMCO5=PU(16.3=17.8),PF087025=Fib_alpha=PU(16.8=16.3),PF057016=WEMBL=PU(12.3=13.3)
A:
PF154191=LNP1=FE(17.0=100),PF149921=TMCO5=FE(16.3=100),PF087025=Fib_alpha=FE(18.3=100),PF057016=WEMBL=FE(16.4=100)
C2:
PF154191=LNP1=PD(19.9=59.6),PF149921=TMCO5=PD(25.9=80.9),PF087025=Fib_alpha=PD(18.3=51.1),PF057016=WEMBL=PD(29.5=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGAAGCTATGAGGGGGA
R:
TCTCATTGTGGCTAAGGCTGC
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]