GgaEX6015439 @ galGal4
Exon Skipping
Gene
ENSGALG00000001921 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:HGNC:10667]
Coordinates
chr17:7889812-7891062:+
Coord C1 exon
chr17:7889812-7890169
Coord A exon
chr17:7890262-7890335
Coord C2 exon
chr17:7890951-7891062
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTCTTCTCCTGTAGCTG
3' ss Score
9.75
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
TATGGCGGCGGCGGAGCTGCCTGAGTCCCCCACCGCCGAGCCCAACCCCTTCTCCTTCCGCGAGTTCGTGCGGAGCAAAGCCCGGAGCGGCGACGGAGCTCCGTCCGTCCGCGCCGAGGAGCCCGTCTTCCTCAGTCCCCGCCCCCCTTCCCCTCCCCAGGCGGCTCAGCTCTGCCCCCTCCTCGGCTCCCCGCTGCTGCCGGGCCCGGCGCCTCCCGGTGGGGCGGAGGAGGACGAAGACGAGGCGGAGTGGAGCGGCAGTTACCGACCCGCGGCCGCTGAACGGGCGCACCTCACTGCGGCCTTCTGTGAGGCCGGGGGGGCGGGCGCTGCTCCGCGGCGGCGCAGCTACGAGGAG
Seq A exon
CTGAAAGCAGAGAACGCCGCGTTGCGGAGGAGGATCCGCGAGCTGCAGGAGATCTCTGGGGCTCAAACAGACGT
Seq C2 exon
GATGAAAAAGCTCGAAAGAAAGCTCGAGGAAAACAAAATCAAAGAAGAGAAGGAAGCTCGGGACTTGGAAGCAATGGTGCAGCACGTGGAGCAGAATCTCCAGCTGATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001921-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.560 C2=0.697
Domain overlap (PFAM):
C1:
PF154191=LNP1=PU(28.9=38.7),PF0076914=ERM=PU(7.0=10.1)
A:
PF154191=LNP1=FE(15.1=100),PF0076914=ERM=FE(14.0=100)
C2:
PF154191=LNP1=FE(23.3=100),PF0076914=ERM=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAGCGGCAGTTACC
R:
TTCCAAGTCCCGAGCTTCCTT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]