BtaEX6047183 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000001352 | SDCCAG3

Description

Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]

Coordinates

chr11:103912908-103914132:-

Coord C1 exon

chr11:103914043-103914132

Coord A exon

chr11:103913433-103913506

Coord C2 exon

chr11:103912908-103913019

Length

74 bp

Sequences

Splice sites

3' ss Seq

AGGATTTTCTTTTTCTGCAGCTG

3' ss Score

8.41

5' ss Seq

AATGTATGT

5' ss Score

5.87

Exon sequences

Seq C1 exon

CCGACGGGGAGCCCCAGCGCTGACTTCACAGCCCACGGAGAGAGTCTGGGGGACAGGCACCTTCGGACACTGCAGATAAGTTACGAAGCA

Seq A exon

CTGAAAGATGAGAATTCTAAGCTAAGAAGAAAGCTGACTGAGATTCAGAGCTTCTCTGAAACTCAAACAGAAAT

Seq C2 exon

GGTGAGGACGCTTGAGCGGAAGTTAGAAGCGAAAATGATCAAGGAGGAGAGTGACTATCACGACCTGGAGTCGGTGGTGCAGCAGGTGGAGCAGAATCTGGAGCTCATGACT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000001352-'12-7,'12-6,15-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.533 A=0.160 C2=0.204

Domain overlap (PFAM):

C1:

PF041569=IncA=FE(18.0=100),PF079026=Gp58=PU(16.2=93.3),PF131661=AAA_13=PU(13.1=63.3),PF0076914=ERM=PU(10.6=56.7),PF057016=WEMBL=PU(10.1=50.0),PF0026115=Tropomyosin=PU(10.3=40.0),PF149321=HAUS-augmin3=PU(8.1=40.0)

A:

PF041569=IncA=FE(14.9=100),PF079026=Gp58=FE(13.9=100),PF131661=AAA_13=FE(16.6=100),PF0076914=ERM=FE(14.9=100),PF057016=WEMBL=FE(16.2=100),PF0026115=Tropomyosin=FE(20.5=100),PF149321=HAUS-augmin3=FE(16.1=100),PF107214=DUF2514=PU(16.2=64.0)

C2:

PF041569=IncA=FE(23.0=100),PF079026=Gp58=FE(21.4=100),PF131661=AAA_13=FE(25.5=100),PF0076914=ERM=FE(23.0=100),PF057016=WEMBL=FE(25.0=100),PF0026115=Tropomyosin=FE(31.6=100),PF149321=HAUS-augmin3=FE(24.8=100),PF107214=DUF2514=FE(37.4=100)

Main Inclusion Isoform:

ENSBTAP00000049441