GgaEX6015439 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:8579137-8580161:+
Coord C1 exon
chr17:8579137-8579268
Coord A exon
chr17:8579361-8579434
Coord C2 exon
chr17:8580050-8580161
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTCTTCTCCTGTAGCTG
3' ss Score
9.75
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GAGGAGGACGAAGACGAGGCGGAGTGGAGCGGCAGTTACCGACCCGCGGCCGCTGAACGGGCGCACCTCACTGCGGCCTTCTGTGAGGCCGGGGGGGCGGGCGCTGCTCCGCGGCGGCGCAGCTACGAGGAG
Seq A exon
CTGAAAGCAGAGAACGCCGCGTTGCGGAGGAGGATCCGCGAGCTGCAGGAGATCTCTGGGGCTCAAACAGACGT
Seq C2 exon
GATGAAAAAGCTCGAAAGAAAGCTCGAGGAAAACAAAATCAAAGAAGAGAAGGAAGCTCGGGACTTGGAAGCAATGGTGCAGCACGTGGAGCAGAATCTCCAGCTGATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001921-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.160 C2=0.658
Domain overlap (PFAM):
C1:
PF0076914=ERM=PU(7.0=40.0),PF154191=LNP1=PU(19.9=93.3),PF0026115=Tropomyosin=PU(1.8=6.7)
A:
PF0076914=ERM=FE(14.0=100),PF154191=LNP1=FE(17.0=100),PF0026115=Tropomyosin=FE(21.2=100)
C2:
PF0076914=ERM=FE(21.5=100),PF154191=LNP1=FE(26.2=100),PF0026115=Tropomyosin=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAGCGGCAGTTACC
R:
TTCCAAGTCCCGAGCTTCCTT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]