MmuEX0006242 @ mm9
Exon Skipping
Gene
ENSMUSG00000026755 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:MGI Symbol;Acc:MGI:1921442]
Coordinates
chr2:38863990-38869419:+
Coord C1 exon
chr2:38863990-38864090
Coord A exon
chr2:38868635-38868707
Coord C2 exon
chr2:38869243-38869419
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTAACTGGCTTTGATGCACAGG
3' ss Score
-3.62
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTGGTTGGCCTTACGCCTTTCTCAGCAGCGCAGCCCTGGAGCTCCTCTCCCTCTGCTCTGCTGCGCTCCGCATCCTTCTGGGTGTCCGTGCATCGGCCTTG
Seq A exon
AGGGGACATGCTTCGGGCGTTCCATGCAGCTTTGCGGAACTCACCAATCAACACCAAGAATCAAGCTGTGAAG
Seq C2 exon
GAACGAGCCCAGGGTGTAGTCCTGAAAGTACTCACAAACTTTAAGAGCAGCGAAATTGAGCAGGCTGTGCAGTCACTGGACAGAAATGGCATTGATTTGCTAATGAAGTACATTTATAAAGGGTTTGAGAAGCCTACAGAAAATAGCAGTGCAGTGCTACTCCAGTGGCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026755-'4-3,'4-1,6-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF046999=P16-Arc=FE(16.4=100),PF093845=UTP15_C=FE(20.9=100)
C2:
PF046999=P16-Arc=FE(39.7=100),PF093845=UTP15_C=FE(50.4=100),PF040037=Utp12=PU(91.9=96.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACGCCTTTCTCAGCAGC
R:
CCATTTCTGTCCAGTGACTGCA
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types