HsaEX6063001 @ hg19
Exon Skipping
Gene
ENSG00000136950 | ARPC5L
Description
actin related protein 2/3 complex, subunit 5-like [Source:HGNC Symbol;Acc:23366]
Coordinates
chr9:127630707-127637430:+
Coord C1 exon
chr9:127630707-127631718
Coord A exon
chr9:127635971-127636043
Coord C2 exon
chr9:127637254-127637430
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTAACTGGTGGTGATGCACAGG
3' ss Score
-5.53
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGAACCAGCGCAGTTACGGCACACACGAGGCGGGGCCTGCACAGATGCCGGGCGCCCGATCCTCAGTGACAAAATAGAGACTCCGTGGAAGGGACACTGAGGTGGGGGAGGCTGCGGTGATCCCATACCGCACTCCAGGTGCCAGGCTCCGCCCCGCCCCTGACGGCGCTTCCGGATCCGGCGGGTGCCGGAAGTGGGCGGGCGGCGGCGGCTGCGCGCGGAGGCGGTGGAGGAGGTGCTGGGAGCAGCCGGGCAGCCGCTTCCCGCCCCCGAGCAGGAGCCGGTGCGAGCGGAGCAGAGCCGAGGTCGGGCCGCGAGCGGAGCCGGCTGAGCGGGCGCCGAGCTCCCGCCATGGCCCGGAACACGCTGTCCTCGCGCTTCCGCCGGGTGGACATCGACGAATTTGACGAGAACAAATTTGTGGACGAGCAGGAGGAGGCGGCGGCGGCGGCGGCGGAGCCAGGCCCGGACCCGAGCGAGGTGGACGGGCTCCTGCGGCA
Seq A exon
AGGGGACATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCCGTCAACACCAAGAATCAAGCTGTGAAG
Seq C2 exon
GAGCGAGCCCAGGGCGTGGTGCTGAAAGTGCTCACAAACTTCAAGAGCAGTGAGATTGAGCAGGCTGTGCAGTCACTGGACAGAAACGGCGTTGACTTGTTAATGAAGTACATTTATAAAGGCTTTGAGAAGCCCACAGAAAATAGCAGCGCAGTGTTACTCCAGTGGCACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136950-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=0.240 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0),PF093845=UTP15_C=PU(26.1=62.0)
A:
PF046999=P16-Arc=FE(16.4=100),PF093845=UTP15_C=FE(20.2=100)
C2:
PF046999=P16-Arc=FE(39.7=100),PF093845=UTP15_C=FE(48.7=100),PF040037=Utp12=PU(91.9=96.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGGACATCGACGAATTT
R:
GCCTGCTCAATCTCACTGCTC
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)