BtaEX0004417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015278 | ARPC5L
Description
Bos taurus actin related protein 2/3 complex, subunit 5-like (ARPC5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001034737]
Coordinates
chr11:95859894-95865398:+
Coord C1 exon
chr11:95859894-95860120
Coord A exon
chr11:95864183-95864255
Coord C2 exon
chr11:95865222-95865398
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTAACCGCTGCTGGTGCACAGG
3' ss Score
-4.02
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCGGAGCCGGTTTTGAGCGGAGTAGAGTGGAGGTCTGCTCCGGAGCATAGCCGGTTCAGCGGGCGCTGAGTCCCCGCCATGGCCCGGAACACGCTGTCCTCGCGCTTCCGTCGGGTGGACATCGATGAATTTGATGAGAACAAATTCGTGGACGAGCAGGAGGAGGCGGCGGCGGCGGCGGGCGAGCCAGGCCCGGACCCTAGCGAGGTGGACGGGCTCCTGCGGCA
Seq A exon
AGGGGACATGCTCCGGGCATTTCACGCAGCCTTGCGGAACTCTCCTGTCAACACCAAGAACCAAGCCGTGAAG
Seq C2 exon
GAGCGGGCCCAGGGCGTGGTGCTGAAAGTGCTTACAAACTTTAAGAGCAGCGAAATCGAGCAGGCTGTGCAGTCGCTGGACAGAAATGGCATTGACTTGCTAATGAAGTACATTTATAAAGGGTTTGAGAAGCCCACAGAGAATAGCAGTGCAGTGTTACTCCAGTGGCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015278_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=0.240 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0),PF093845=UTP15_C=PU(25.4=60.0)
A:
PF046999=P16-Arc=FE(16.4=100),PF093845=UTP15_C=FE(20.3=100)
C2:
PF046999=P16-Arc=FE(39.7=100),PF093845=UTP15_C=FE(49.2=100),PF040037=Utp12=PU(91.9=96.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGTGGACATCGATGAAT
R:
CTGCTCGATTTCGCTGCTCTT
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development