DreEX6051150 @ danRer10
Exon Skipping
Gene
ENSDARG00000041720 | arpc5la
Description
actin related protein 2/3 complex, subunit 5-like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1453]
Coordinates
chr8:41446058-41454219:+
Coord C1 exon
chr8:41446058-41446444
Coord A exon
chr8:41449819-41449891
Coord C2 exon
chr8:41454043-41454219
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTAACTAACTGTGATGCACAGG
3' ss Score
-4.8
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ACTATGCTGTGTAATTCCGCTTCCGCCCCAGTCGGGATTTTCGTCCGCTCTGCAGGAATGTGTGGTGGAGATGCTCGGGCCGGTGGAGAAGGAACAGCCGCACCTTCCTGCTGACAGATGAACCTTCGACCGGCGGCGGCCCGTGCCTGAGGGAAGCGGACACACGCGCGCACCCCACCCGTCCCGCCACCGCGCTTTCCCGGACTCCCCCAACCGATAGATCGACTGATTAAAGCGGCTCCTCCTCATGGCGAAAAACACCCTGTCCTCACGGTTCCGGGGAGTCGATATCGACGAGTACGACGAGAATAAATTCGTGGACGACCAAGACGAGGCGGCCGAGCAGCAGGGACCGGACGCGTGTGAGGTGGACGATCTCATCAGGCA
Seq A exon
AGGGGACATGATGACAGCATTTCACATCGCCTTGAGGAATCCACCAATCAACTCCAAGAATCCAGCAGTGAAA
Seq C2 exon
GAGCGGGCACAGGCGGTGGTGTTACGAGTGCTGACTGCATTTAAAAGCAGCGATATTGAGCCAGCGGTAAAGTCTCTGGACAAGAACGGAGTGGATCTGCTGATGAAGTACATCTACAGAGGCTTCGAGAAGCCCACAGACAACAGCAGTGCCATCCTGCTGCAGTGGCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041720-'2-6,'2-2,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.162 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(27.3=83.0),PF063236=Phage_antiter_Q=PU(17.3=40.4)
A:
PF046999=P16-Arc=FE(16.8=100),PF063236=Phage_antiter_Q=FE(21.8=100)
C2:
PF036668=NPR3=PD(20.5=30.5),PF046999=P16-Arc=FE(40.6=100),PF063236=Phage_antiter_Q=FE(52.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAAAACACCCTGTCCTCA
R:
GTCAGCACTCGTAACACCACC
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]