MmuALTD0001644-2/6 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026755 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:MGI Symbol;Acc:MGI:1921442]
Coordinates
chr2:38863744-38868707:+
Coord C1 exon
chr2:38863744-38863844
Coord A exon
chr2:38863845-38863864
Coord C2 exon
chr2:38868637-38868707
Length
20 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACTGGCTTTGATGCACAGGGG
3' ss Score
3.6
Exon sequences
Seq C1 exon
TCCGCCGCGTGGATATCGACGAATTTGACGAGAACAAATTCGTAGACGAGCACGAAGAGGCAGCGGCGGCGGCGGGCGAGCCAGGCCCCGACCCCTGCGAG
Seq A exon
GTAGACGGGCTCCTGCGGCA
Seq C2 exon
GGGACATGCTTCGGGCGTTCCATGCAGCTTTGCGGAACTCACCAATCAACACCAAGAATCAAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026755-0-2,1-2,2-2,3-2,4-2,5-2-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.124
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0),PF093845=UTP15_C=PU(23.5=54.0)
A:
NA
C2:
PF046999=P16-Arc=FE(15.8=100),PF093845=UTP15_C=FE(20.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAGACGAGCACGAAGAGG
R:
ATTGGTGAGTTCCGCAAAGCT
Band lengths:
108-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: