MmuEX0038666 @ mm9
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33140345-33192140:-
Coord C1 exon
chr2:33192033-33192140
Coord A exon
chr2:33180173-33180223
Coord C2 exon
chr2:33140345-33140428
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTATTCCTATTCTCTTGTAGAGT
3' ss Score
9.5
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCAGCAGCAGCTCAGACTCGCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCCGAGGAGTTTGCC
Seq A exon
AGTCAGATCACATTGATGGACATCCCCGTGTTCAAAGCCATCCAGCCAGAG
Seq C2 exon
GAGTTGGCCAGTTGTGGATGGAGTAAAAAGGAGAAACACAGTCTTGCCCCCAACGTCGTGGCCTTTACCCGGAGGTTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX2-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(18.2=22.2)
A:
PF0061714=RasGEF=FE(36.4=100)
C2:
PF0061714=RasGEF=FE(14.5=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTACGATGCTGTCG
R:
GTTGAACCTCCGGGTAAAGGC
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: