RnoEX0073775 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12330524-12377216:-
Coord C1 exon
chr3:12377109-12377216
Coord A exon
chr3:12364818-12364868
Coord C2 exon
chr3:12330524-12330607
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTATCCCTATTCTCTTTTAGAGT
3' ss Score
9.54
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCAGCAGCAGCTCCGACTCACTGGAGGGCCAGAGCTGCGACCATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCTGAGGAGTTTGCC
Seq A exon
AGTCAGATCACATTGATGGACATCCCCGTGTTCAAAGCCATCCAGCCAGAG
Seq C2 exon
GAATTGGCCAGCTGCGGATGGAGTAAAAAGGAGAAACACAGTCTTGCCCCCAATGTCGTGGCCTTTACTCGGAGGTTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-'8-7,'8-4,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(11.6=22.2)
A:
PF0061714=RasGEF=FE(23.2=100)
C2:
PF0061714=RasGEF=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTACGATGCTGTCG
R:
TGAACCTCCGAGTAAAGGCCA
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]