HsaEX0052092 @ hg19
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129728123-129796793:+
Coord C1 exon
chr9:129728123-129728230
Coord A exon
chr9:129739974-129740024
Coord C2 exon
chr9:129796710-129796793
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGATTCTCTTTTGTTGCAGAGC
3' ss Score
10.09
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCAGCAGCAGCTCGGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTATGATGCCGTTGTCTTCGATGTCTTGAAAGTGACCCCAGAGGAGTTTGCT
Seq A exon
AGCCAGATTACATTAATGGATATACCTGTGTTTAAAGCTATCCAGCCGGAG
Seq C2 exon
GAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACACAGTCTTGCCCCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828_MULTIEX1-2/15=1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(14.5=22.2)
A:
PF0061714=RasGEF=FE(29.1=100)
C2:
PF0061714=RasGEF=FE(49.1=100),PF0061714=RasGEF=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACTATGCCAGCAAGAG
R:
CGGGTAAAGGCCACAACGTTA
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)