MmuEX0038666 @ mm10
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33284825-33336620:-
Coord C1 exon
chr2:33336513-33336620
Coord A exon
chr2:33324653-33324703
Coord C2 exon
chr2:33284825-33284908
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTATTCCTATTCTCTTGTAGAGT
3' ss Score
9.5
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCAGCAGCAGCTCAGACTCGCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCCGAGGAGTTTGCC
Seq A exon
AGTCAGATCACATTGATGGACATCCCCGTGTTCAAAGCCATCCAGCCAGAG
Seq C2 exon
GAGTTGGCCAGTTGTGGATGGAGTAAAAAGGAGAAACACAGTCTTGCCCCCAACGTCGTGGCCTTTACCCGGAGGTTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX2-3/8=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(9.1=47.2)
A:
PF0061714=RasGEF=FE(8.2=100)
C2:
PF0061714=RasGEF=FE(14.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTACGATGCTGTCG
R:
GTTGAACCTCCGGGTAAAGGC
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types