GgaEX6015673 @ galGal3
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11020853-11025655:+
Coord C1 exon
chr17:11020853-11020960
Coord A exon
chr17:11023550-11023600
Coord C2 exon
chr17:11025572-11025655
Length
51 bp
Sequences
Splice sites
3' ss Seq
AAATTCTGTTTTTATTGCAGAGC
3' ss Score
8.3
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTAGTAGCAGCTCAGATTCTCTGGAAGGGCGAAGTTCAGATTATGCCAATAAGAGCTATGATGCTGTTGTATTTGATGTATTAAAAGTAACTCCTGAGGAGTTTGCT
Seq A exon
AGCCAAATTACGTTAATGGATATGCCAGTATTTAAAGCTATACAGCCTGAG
Seq C2 exon
GAACTAGCCAGCTGTGGGTGGAATAAGAAAGAAAAGCATATCCTTGCTCCAAATATTGTTGCCTTCACTAGGAGGTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(4.1=22.2)
A:
PF0061714=RasGEF=FE(8.2=100)
C2:
PF0061714=RasGEF=FE(13.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGCAGCTCAGATTCTCTGGA
R:
CTTATTCCACCCACAGCTGGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]