BtaEX0029605 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97710559-97780240:+
Coord C1 exon
chr11:97710559-97710666
Coord A exon
chr11:97722712-97722762
Coord C2 exon
chr11:97780157-97780240
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCAGTTCTCTTTTGTTGCAGAGC
3' ss Score
9.08
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCAGCAGCAGCTCAGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGACGCCGTTGTCTTCGATGTCCTGAAAGTGACTCCCGAGGAGTTTGCC
Seq A exon
AGCCAGATCACGCTAATGGACATACCCGTGTTTAAAGCCATCCAGCCGGAG
Seq C2 exon
GAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACATAGTCTCGCCCCCAACGTCGTGGCCTTTACCCGGAGGTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-'11-14,'11-10,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(4.1=22.2)
A:
PF0061714=RasGEF=FE(8.2=100)
C2:
PF0061714=RasGEF=FE(13.8=100)
Main Skipping Isoform:
ENSBTAT00000061364fB5723
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGCGACTATGCCAG
R:
GTTGGGGGCGAGACTATGTTT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development