MmuEX0038665 @ mm9
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33180173-33196353:-
Coord C1 exon
chr2:33196233-33196353
Coord A exon
chr2:33192033-33192140
Coord C2 exon
chr2:33180173-33180223
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGCCTTCTCTATAGGGC
3' ss Score
10.54
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GACCTCTCAGACAGGTTATGTCACCAGCAGAGGTGGCGCCGAAGTTCCCTGCGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAG
Seq A exon
GGCAGCAGCAGCTCAGACTCGCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCCGAGGAGTTTGCC
Seq C2 exon
AGTCAGATCACATTGATGGACATCCCCGTGTTCAAAGCCATCCAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX2-2/7=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061714=RasGEF=PU(18.2=22.2)
C2:
PF0061714=RasGEF=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTATGTCACCAGCAGAG
R:
CTCTGGCTGGATGGCTTTGAA
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: