BtaEX6046192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97706783-97722762:+
Coord C1 exon
chr11:97706783-97706904
Coord A exon
chr11:97710559-97710666
Coord C2 exon
chr11:97722712-97722762
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTGTCCTCCGCAGGGC
3' ss Score
12.86
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GACTTCTCCAGACAGGTTATGTCACCGACAGAGGCTGCCCTGAAGCTCTCTGTGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCCGCCACTCCACAG
Seq A exon
GGCAGCAGCAGCTCAGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGACGCCGTTGTCTTCGATGTCCTGAAAGTGACTCCCGAGGAGTTTGCC
Seq C2 exon
AGCCAGATCACGCTAATGGACATACCCGTGTTTAAAGCCATCCAGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-'9-10,'9-5,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061714=RasGEF=PU(4.1=22.2)
C2:
PF0061714=RasGEF=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTATGTCACCGACAGAG
R:
CTCCGGCTGGATGGCTTTAAA
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]