HsaEX0052085 @ hg19
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129724504-129740024:+
Coord C1 exon
chr9:129724504-129724625
Coord A exon
chr9:129728123-129728230
Coord C2 exon
chr9:129739974-129740024
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCTGCTCTCCACAGGGC
3' ss Score
12.29
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTTCTCCAGACAGGTTATGTTACCTGCAGAGGCTGCCCTGAAGCTCCCTGTGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAG
Seq A exon
GGCAGCAGCAGCTCGGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTATGATGCCGTTGTCTTCGATGTCTTGAAAGTGACCCCAGAGGAGTTTGCT
Seq C2 exon
AGCCAGATTACATTAATGGATATACCTGTGTTTAAAGCTATCCAGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828_MULTIEX1-1/15=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061714=RasGEF=PU(14.5=22.2)
C2:
PF0061714=RasGEF=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCCAGACAGGTTATGTTACC
R:
GCTGGATAGCTTTAAACACAGGT
Band lengths:
167-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)