RnoEX0073782 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12364818-12415073:-
Coord C1 exon
chr3:12414853-12415073
Coord A exon
chr3:12377109-12377216
Coord C2 exon
chr3:12364818-12364868
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGCCTTCTCCATAGGGC
3' ss Score
11.53
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
TCAGGCCCAGGAGTGGACGGTTCCTACTGCGGCTGGGCACCGGCTGGGCTCCCGCGTCGGCCCCGCGTTTCAAGCTTGCGCCTGGCTCAACCTCAACCCAGGTCGGCCCGGCCCCGGTCTCAGAACGAAGGCGCCGCTGCCGCTGGGCCTCTCGCAGGGCCATGAAGAAGCGGCGGCAGTCACTGCGGCCCTCGTCAAGGTGACCAGCCCGGACTACAGTG
Seq A exon
GGCAGCAGCAGCTCCGACTCACTGGAGGGCCAGAGCTGCGACCATGCCAGCAAGAGCTACGATGCTGTCGTCTTCGACGTTCTGAAAGTGACTCCTGAGGAGTTTGCC
Seq C2 exon
AGTCAGATCACATTGATGGACATCCCCGTGTTCAAAGCCATCCAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.172 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0061714=RasGEF=PU(11.6=22.2)
C2:
PF0061714=RasGEF=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGGACGGTTCCTACTG
R:
GATGGCTTTGAACACGGGGAT
Band lengths:
255-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]