DreEX0060666 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:33083358-33093277:-
Coord C1 exon
chr8:33093144-33093277
Coord A exon
chr8:33087636-33087740
Coord C2 exon
chr8:33083358-33083408
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCCTGGGTCTGCAGGAC
3' ss Score
8.92
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGATGGCTGAGAGGTTGTGTGTGGCGGTGAGCAGCTGAGGTTGGCTGTGATCTGGGTCTTCTCTTCTGGCTGAGAGCATGTACAGGAGGAATGGACTCCCTGCCAGCGTCAGCATCACCTCTCGCAACACACAG
Seq A exon
GACAGCAGTAGTTCAGAGTCCCTGGATGGACGGAGCTTGGACTCTGCAAAGAGCTTTGACGCGGTGGTGTTTGACATGCTCAAAGTGACACCTGAGGAGTTTGCT
Seq C2 exon
AGTCAGATCACTTTGATGGATGCTCCTGTGTTCAAAGCGATCCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061714=RasGEF=PU(4.0=22.9)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCTGAGAGGTTGTGTG
R:
TCAGGCTGGATCGCTTTGAAC
Band lengths:
184-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]