GgaEX6015674 @ galGal4
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10290287-10294990:+
Coord C1 exon
chr17:10290287-10290343
Coord A exon
chr17:10292243-10292350
Coord C2 exon
chr17:10294940-10294990
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTCTTTGTAGGGT
3' ss Score
12.29
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGTATAAAAGGAATGACTTCATGGCCAATGTGATGGTCACCTCTGCCACTCCAGAG
Seq A exon
GGTAGTAGCAGCTCAGATTCTCTGGAAGGGCGAAGTTCAGATTATGCCAATAAGAGCTATGATGCTGTTGTATTTGATGTATTAAAAGTAACTCCTGAGGAGTTTGCT
Seq C2 exon
AGCCAAATTACGTTAATGGATATGCCAGTATTTAAAGCTATACAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'0-4,'0-1,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.264 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061714=RasGEF=PU(4.1=22.2)
C2:
PF0061714=RasGEF=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAGGAATGACTTCATGGCCA
R:
GCTGTATAGCTTTAAATACTGGCA
Band lengths:
98-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]