MmuINT0013249 @ mm9
Intron Retention
Gene
ENSMUSG00000026817 | Ak1
Description
adenylate kinase 1 [Source:MGI Symbol;Acc:MGI:87977]
Coordinates
chr2:32485024-32485404:+
Coord C1 exon
chr2:32485024-32485136
Coord A exon
chr2:32485137-32485368
Coord C2 exon
chr2:32485369-32485404
Length
232 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
CCCGTTCATTCTTCCCACAGAGA
3' ss Score
11.48
Exon sequences
Seq C1 exon
GCCATGGCAGGGCCAAAGCCAGAGAGAGGGGAGGTGACAGCGGGAACAGGATAGGATCATGGGCTGCTGTGTGTCTAGTGAACCCCAAGAAGAGGGAGGCAGAAAGACTGGAG
Seq A exon
GTGACTGACACCTGGGGTCTCTCGTCTGGCCCTCCCCCACTCAAGGCGCCCATCTCTGTCCCTTAACCTCTGAATCCTTGGCTGAGTTCTTAGCCTCTGGGCTTTGTCTGGGCCTGTCCAGAACACCCACTGTCTGTCCCAGCTCACTCAGCCCAAGTCTGGGTCACACGTGGGCTCTGCCTGCTTGTCTAGCCAGTGACTGATTCGTGCTTCCCGTTCATTCTTCCCACAG
Seq C2 exon
AGAAGCTGAAGAAGGCCAAGATCATCTTTGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026817-Ak1:NM_021515:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCAGAGAGAGGGGAGG
R:
ACCACAAAGATGATCTTGGCCT
Band lengths:
134-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: