HsaINT0006132 @ hg38
Intron Retention
Gene
ENSG00000106992 | AK1
Description
adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]
Coordinates
chr9:127873026-127874649:-
Coord C1 exon
chr9:127874611-127874649
Coord A exon
chr9:127873062-127874610
Coord C2 exon
chr9:127873026-127873061
Length
1549 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCCCCTTTTCTCTCCCGCAGAGA
3' ss Score
14.05
Exon sequences
Seq C1 exon
AGCACTGACACGGCTCCCGGGACCTCGGCAGGATGGAAG
Seq A exon
GTATGAGCCTCCTCTCCTTTTGCCCATTGCCTGGGCCTCAGTGTGCCTGACTATTAAGGGGGTGCGCTCTCAGGGAGACATTCTGGGAGGGGTTGGAGGAGGCTCTGGGGCTGCCGGAGGGGGCCTGGCTGGGAGCCTCCAGTATCCTCCTCTGGCCTCTCACGGGATGTGCCAGCTCCAAGATTAATTTTAGACGTGACGAGGCCTCCCCAAGGCTCCTGAGGGCCCCAGCGCACACCCCCTATGCTGGGTTTATAGAGCTGAGACCCTGCCCCATGGAGAGGCCACAGATACACAAAACACCAGGTCTAATGAGGACAAGGCAATTCCCCGTACCTCTCCGGGACTCAGTTTCCCTATCATCCAGTGAGGGTGGGCCTTGAGGAAGTCTTGGACCCTCCTAGTTCCTATGGGCTGGGACTTAGAGGGAGACACGGGCAGGCAGAGAGTCCAGAACGGGCCCGCCCTCAGCTGCTGGCAGCACCATCCGTCCAGTTCCTGGCACTGTGCCTTGGCCTGGGCAGCTCTTAAAGACACCCAGCGGGCCTGCTGCTGCTGCTGCTGCTGCTCTGCCTGAGCTCCAAATATCAACAGCCATAGGGCTGCGGCCACTGCACCCCCGGGATAGGGGCCCACAGGAGGAGCCCTTCTTGACAGCTCCTGTAGGGCTCCAGCCTTATGGCTGGGAGGGCCCCTGGGAGCCGCCCAGCCCACCTCCTCCCTGGGGAAGGGGCAGAGAACCAGAGAGGGGCAGGCCTTTCCTAAGTCACACAGCAAGGTGGGATACAGCCTGGTCCTCTATTTCCCTGGGAAGCGGGGGAGCCTGAAAGCCCAGTGGGGAGCTTGGGTTCTGGTTTTGGTTCTGACATCCCTTGAGCAGGCCTTCCCTCTCTCGAGCTCAGTTTCCCTCTGCCCAGTGGGGCTGTGGCCTTGCTGGGATCTAACAGCAGGCGGGACGAGACAGAGGTTGGAGCCAAGCTCACCGCCCTCTCTGGGCAAGAGTTCCACATGCCCACCACAGCCCTCCACCCCGGCAACTGTCTCCATGGCAACATATGTTGTGGTTGCTAAGCCCCCACTGCCGGGGGAGGCGGGTGATGGGCCGGCCCAGGGCCTGAGAGGGGAAGGGCAGGGTGCACAGGAGACACGGCAGGACGGGACCATGGGCTGCTGCTCCTCGAGTGACCCCCGCAGAGAAGACGATCTGAGAGCCAGAGGTGACCGGCCCCGGGGTCCAGGCACCCACAGGGAGGCGCCATGAGGGCTGGCGGCCCAGCCCGCTGGCTGTGTGGAGAGTACTTAGCCTTTAGGCTTTTGCCTCTGCCCGTCTGGCTGCCTGGAGCACCCTCTCTTCCCTGACCTCTCCCAGGCTCCGAGCTCACTCACATCCCTGCTGACTCTGGGCTGTGACTTGTCTGCCTCCCTGACAGGAGCGCCAGCGGTGTCTGTCCCTCCGCCTGGGGCCCAGCACAGGCCTGGGACTCCAGAGGTGCCTCTGGCTGTGGGTCCAGCGAGTGACTGAGCCCTGCTCCCCTTTTCTCTCCCGCAG
Seq C2 exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106992:ENST00000373176:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.191
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development