GgaINT1005928 @ galGal4
Intron Retention
Gene
ENSGALG00000029150 | AK1
Description
Adenylate kinase isoenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:P05081]
Coordinates
chr17:4877410-4878972:+
Coord C1 exon
chr17:4877410-4877489
Coord A exon
chr17:4877490-4878936
Coord C2 exon
chr17:4878937-4878972
Length
1447 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTCTCTCTCTCCACCAGAAA
3' ss Score
10.58
Exon sequences
Seq C1 exon
CTGCCGTGCCTCTCACTCTGCTCTGCTTCCCTTGCAGCCTGAAGTGCTCCTCCACCCAGACAGCAGCAGCATGTCGACAG
Seq A exon
GTGAGTGCTTTGCATCTGTGCCTCCTGCATCCATTCCCTCCATCCCCTTTGCATTCACCCCCCCTTGCACCTGATCCCTCGATCCCCCTTGGCATCCATCCTCTCCAACCCCTGTTGCCTCCATCCCTTTTATCTCATTGTGTGTACTCAATTTTTCCTCCTTGTGTCCATCTCCTGCGTCCTTTTTGCATTTGTCCTCTCTGTCCCTCTTGCATCTAAACCCTTGGTCCCCCTCGTGTCCATCCCCTGTGTCCATCTGTTCCCTCTGTTCCTCTTGCATCTAATCCCTTAGTTCCCTTTGCATCCATCCATCTGTCCCCCCATCCTCCTATGTTGTCCATTTGTGTCCATCACTTGTGCCTCGACATGTCCATCCCTTTTCTCCCCCTTACATCTGATCTCTCAGCCCTCTGTGCCTGTCTCCCATGTCCTCTTTGTATCTGTCACCTCTGTCCCTCTTGCATCTGATCCTTAGGTCCCCTTTTGTGTCTGTCTCATGTTCTCTTTCCATCTATCTCCTCTGTTTCCCTTGTATCCAAGTCCTGAATCTCTCATCCAATCCCCAGAGTCCCCCCCTTGTGTCCATCTTCTATGTTCTCCAGTAGTGTCTGTCTCCTCTGTCTCCCCCTCGTGTCCATTCCATGTCCTCTTTCCATCCCTTCCCTCCATTCCCCTTACGTCCGCTCCCTGTCCCCCCTTTGCCTCTGTCCCATTTCTCCCCCTTGCTTCCCTCCAGCCCCCACGTACTCCATGTCTTCTGCCCACCCCCCCTTCCCCACCAGCCTCTTGGCTCCCTCCCATCCCAGGGCTCACCGGCTGCTGGAGGAGCTGAAATTTCAGAAGACTGAGATCTGGAGATGGGCAGCACGGCCCCAGGGTGGCTCATGTTATTTTTAGCGTCCTCCCTCTGCGCTGTCACACCCCAACGCGTGGCAGGGACAGATCCTGCAGGGGGGGGGGGAATCCTGCAGGGAAAACCCCCCCGTCCTATGGGCTGGAGTGCTCTGAGTGGATGGGTCTATGCCATTCCTGGGGACAATCAGATCCCACGGGGTTGTGCCATGCTGTGCCATGCTGCACCAAGCATGACTAGGAGCTGACCATGGGGATGGTTGTGGCTGTCCCTGCTGGTTCCTATCCCTCAGTGGGGTACAATGGAGACAATGACCGTCTCCAGGATGCAGTGGAGTTCCAACCCCTCAGCTCAACCCCTCGTCTGCCAGGACACCATGGGGTCTCAGTGCACGAGCATGTGCAGCTTCAATCCTGGACTGTCTAGGTGACAGGATGACAGGATGAGCGCTTCCTACTCTGCCCTCCCTGGGGTTGGGGTTGGTCCCCACCACTCCTCGTTCAGTCCTGCCACTGGGGACAGTTTTCTCCCTGGTGTAACTTCTGGCTTTTAGATTTATTGTTGTTTGTTTTTTTTCTTCTCTCTCTCCACCAG
Seq C2 exon
AAAAACTGAAGCACCACAAGATCATCTTCGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029150:ENSGALT00000043760:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]