BtaINT0016317 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006305 | AK1
Description
Bos taurus adenylate kinase 1 (AK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013582]
Coordinates
chr11:98556784-98558396:-
Coord C1 exon
chr11:98558358-98558396
Coord A exon
chr11:98556820-98558357
Coord C2 exon
chr11:98556784-98556819
Length
1538 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCCCCTCTTCTCTCCCACAGAGA
3' ss Score
12.79
Exon sequences
Seq C1 exon
AGCGCTGACTCGGCTGCCCGGATCACAGCAGGATGGAAG
Seq A exon
GTATGGAAGCGCCTCTCCTTGCCCACTCACAGCCTGGGCCTCAGTGTGCCCATCTGTTAAAGGGGTGTGCTTTGGGGAGACATGCAGGGACGGTTTGGAGGTAGCTCTGGAGCTGCCAGAAGGACCTGTCTGGGGGCCTCCAGCATCTTTCTCAGGCCTCTTGGGCCTCTCGCTTGATGTACCAGCTCCAAGATTAATTTTAGAAGGAATGAGGCTTCCTTGAGGCTTCTCAGGGCCCCATAGCTCACCTCCTACACTGGTATTTATAGAGCTGAATCTCTGGCTCTTTCTGGAGGGGGGGCACAGCGCTAGTGAGGGAAGGCCTGCCCTGCGGAGAGGCCCCAAGTGTGCAAATGCCAAGGCAAACAAGGACACGCTCCTGCCCCTCTCCCGGACCGGTGGAGTTGAGTCTTCAGGGTGTCTTGGGCTCTCCTGGCTCCTGCGGGCTGGGTCCTGCAGGGAGACGTGGGCAGAGCGCCCGGCTGGCCCGCCTCCTGGCGACACCACCCATCCCATCCCTAGCACTGGGTCCTGGCCCAGGCGGCTCTTAAAGGAGCCCAGTGGGCCTGGCTGCTGCTGGCGCCTGAAGCTGGCAGTCATCCTTCTACCCCCAGGGCTCTGAACATAGGTGCCGCTGGGCTGTGTGGGCACACCGCCCCCCCACCGCCACTCCCAGGCTTGTACCCTTTCACACGGCCACAGACGATGGAAGCCCATGGAAGTCATTCTAGCAGCTCCTCAAGACCCCTGGGAGCTTGCCAAGCTCACCTCCCCATTGGCACACAGAGCTCCTACTTCCCTGAGAAACGGAGAAGCCCGGGCAGCTTGGAAAGAGGCCCCCCCCGCCCCCCGCCCAGTCCCAGCAGGCGCCTGCCTCCAGGCCTCAGTCCCTTCTGTATGGTGGGGCTGCGGTCTGGTGGAGTTCTGAGGCAGAGGTTGAAACGCAAGCTCCCTCCCGCCCTCTCTAAGCAAGGGTTCCATGTGCCCACCGCAGCCCTCTTCCCCAGCAACCGTCTCCAGGGCAACATATGTTGTGGTTGCCAACTCCACACTGGTACTGCCTAGGGGAGGCAGGCGATGGGCAGGCCCAGAGCCTGAGGGGGGAAGGCTGGGGGACACAGCAGACCGGGACCATGGGGGCCTGCTGCTCGGGGACAGACCCCCGCATCATGGAAGACTCTAGAGCCAGAGGTGACCCAGCGCCTTGGTCCAGCTGCCCACAGGGAGGGGCCGTGAGGGTGGGCGTCTGAGCCCCTGAGCGTCACCCTCACGGCCTGTGCGGAGCCCGTGACTTCCAGGCCTTGGTCCCTGCGGGTCTCTCCGCCTGGATCAGCCTCACCTCCCCGGCCTGTCCCGGTCTCTGCGTTTCCCTCGCCCCGTATCCCTCGCTCTGGGCTGACTCATTTGCCTCCCTGACGTGAACATGAGCGGTGTCCGTCCCTCTGCCTGGGGCTCAGCACAGGCCTGGGACCTCAGAGGTGCCTCTGGCTCCTTGTCCAGTGACTCACCAAGCTCCGCTCCCCTCTTCTCTCCCACAG
Seq C2 exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006305:ENSBTAT00000054038:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040617=ADK=PU(1.3=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development